Gene VC0395_A1031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1031 
Symbol 
ID5136227 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp1076667 
End bp1077305 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content45% 
IMG OID640532489 
Producthypothetical protein 
Protein accessionYP_001216977 
Protein GI147674879 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.332162 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTATCC AGAATTTCGA AGCTTTTCTT ATCGCTATTA CTATTTTGAC TTTAACACCG 
GGGCTAGATA CTGCTTTGGT GATCCGTAAC ACTTCGCGGG CTGGGTTTGC CGATGGATGC 
ACGACCAGCT TGGGTATCTG TTTTGGCTTA TTCGTTCACG CCACTTTTTC TGCTATTGGT 
ATCTCTGCGA TTCTTGCTCA ATCGGCTGAG CTATTTCAAA TCGTTAAAAT GGTGGGAGCG 
GCTTATCTGA TTTGGTTGGG TATTTCGAGC CTACGATCAT TAATGAAAAC AGGGCAGGGC 
ATTGAGGTTG CGAGCCTAGC TCATGCACAA TTTCGCTTAA CCCGATCGCT GCGTGAAGGT 
TTCCTCTCGA ATGTGCTGAA CCCGAAAACT GCCGTCTTTT ACTTAGCTTT TCTGCCTCAA 
TTTATTAATC CTGACTATTC ACCGTTAGCG CAATCTTTGC TGATGGCGTT GATTCATTTT 
GCGATTGCGA TGGTATGGCA ATGTGGTTTA GCTGGTGCTT TGAGTAGCGC TAAAAACCTT 
CTGAAAAACG CTTCTTTTAT GCGTTGGATG GAAGGTACAA CGGGAGTTGT TTTGGTCGCA 
TTAGGTATCA AACTGCTCTT AGAGAAACCT CAAGCCTAG
 
Protein sequence
MVIQNFEAFL IAITILTLTP GLDTALVIRN TSRAGFADGC TTSLGICFGL FVHATFSAIG 
ISAILAQSAE LFQIVKMVGA AYLIWLGISS LRSLMKTGQG IEVASLAHAQ FRLTRSLREG 
FLSNVLNPKT AVFYLAFLPQ FINPDYSPLA QSLLMALIHF AIAMVWQCGL AGALSSAKNL 
LKNASFMRWM EGTTGVVLVA LGIKLLLEKP QA