| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1026 |
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| Symbol | vgrG-1 |
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| ID | 5135888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1068747 |
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| End bp | 1072034 |
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| Gene Length | 3288 bp |
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| Protein Length | 1095 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640532484 |
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| Product | vgrG protein |
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| Protein accession | YP_001216972 |
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| Protein GI | 147673444 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGACAT TAGCGTACAG CATTGAGGTG GAAGGGCTGG AAGATGAGAC TCTGGTGGTC
AGAGGCTTCC ACGGGCAGGA GTCACTCTCT AATAGTGTTT TTTTAGGGCA AGCCTGTTAC
GGGTTTCGCT ACGAAGTGCA ACTGGCGAGT CGGGTATCAA ACCTCACCGC CGAGCAGATG
GTGGATAAGC GTGCCGAGCT CAAGCTTTAC CGCAACTCAC AGTTGGTGCA GCGCGTGCAC
GGCATTGTGC GTGCTTTCAG CCAAGGCGAT ATCGGCCATC ACCACACCTT CTACCAACTC
ACTTTAGTCC CTGCCTTAGA GCGCTTATCC CTGCGTCATA ACAGCCGCAT TTTCCAAAAG
CAGACTGTCC CTGAGATTCT CTCTATCTTG CTGCAAGAGA TGGGCATCAA CGATTACGCT
TTTGCGCTCA AACGTGATGG CGTGCAGCGT GAGTTTTGTG TGCAGTACCG CGAAAGCGAT
ATCGACTTTC TGCACCGCCT CGCCGCTGAA GAAGGTTTGG TGTACAGCTT TGTCCATGAA
GCGGGCAAAC ATACCCTCTA TTTCAGTGAT GCCAGTGATA GCCTAAGCAA ACTGCCGGAG
CCTATCCCAT ACAACGCTTT AGTCGGTGGC GCGATAGATA CCCCGTATAT CCACGGCTTA
ACCTATCGCA CCCAAGCAGA AGTGAGCGAA GTTCAGCTCA AAGACTACAG CTTCAAAAAG
CCAGCCTACT CCTTTTTGCA AACCGTGCAG GGTACTGAGC TGGATTATCA GCAAACGCGC
TACCAACATT TTGATGCGCC GGGGCGCTAC AAAGACGATG TGAACGGCGC CGCCTTTAGC
CAAATCCGTT TAGACTACCT GCGCCGCCAT GCCCATACCG CAACAGGGCA GAGCAACGAG
CCGCTGCTGC GTGCCGGCTA TAAGTTTGAC CTGCAAGAGC ACCTTGACCC CGCGATGAAC
CGCGATTGGG TGGTAGTGTC GATTAACCAC CAAGGTGAGC AGCCGCAAGC GCTACAAGAA
GACGGTGGCA GCGGCGCTAC TACTTACAGC AATCAGTTCA GCTTAATTCC GGGGCATCTT
CACTGGCGCG CCGAGCCACA ACCCAAACCG CAAGTCGATG GTCCAATGAT TGCCACGGTC
GTCGGTCCTG AAGGCGAAGA AATCTTCTGT GATGAACATG GGCGGGTGAA AATCCATTTC
CCGTGGGACC GTTACTCGAA CGGTAACGAG CAAAGCTCCT GTTGGGTACG GGTGTCGCAA
GGTTGGGCGG GCAGTCAGTA TGGCTTTATC GCTATTCCGC GCATCGGCCA TGAAGTGATT
GTAGAGTTTT TAAACGGTGA CCCAGACCAA CCGATTATCA CTGGCCGCAC TTATCATGCG
ACCAACACGC CGCCATACAC CTTGCCTGAG CACAAAACCA AAACCGTGCT GCGCACCGAG
ACGCACCAAG GGGAGGGCTT TAACGAGCTC AGTTTTGAAG ACCAAGCGGG CAAAGAGCAA
ATCTACCTGC ATGCGCAGAA AGATTTTGAT GGTTTGATTG AAAACGACCA ATTTACCCAG
ATTAAGCACA ACCAACACCT GACGGTGGAG TGGGAAAGTC GAGAAGCGGT AACGGGCGAG
CAAGTGCTGA GTATTGAAGG CTCGCTGCAT GTGAAAACAG GCAAAGTTCG GGTCAATGAA
GCGGGTACAG AGATCCATGT AAAAGCGGGA CAGAAAGTGG TGATTGAAGC GGGCTCCGAG
ATTACCGTTA AAGCGGGCGG CAGCTTTGTG AAAGTCGATC CGGCTGGGGT GCATCTGTCC
GGTGCTTTGG TCAATCTCAA CTCTGGCGGC AGCGCTGGTA GTGGTAGCGG CTTTGGCGGT
GCAATGCCCG CCTTACCGGG CGGCTTAGAA CCCGCCGTGG CACTGGCTCC ACCGCAAACC
ATCTCTTACC AAGCGTTGCT ACAGGCCGAG CAAGCGAATG TTCCTGCGGT GAAGGTGTGT
CCTTTAGCCG CTCAAGAAGC AACGCCTGCG GTGAATAGTA TCACGCCGCC TCCACCACCA
CCGATTGCTC CGCCAATGGC CCCACCACAA CCAATAATGA ATCCACAGCC AACCGCTAAC
GCGCAGCCTA ATCTTGGAAG ATCCACTAAG GCAACGCCGG ATTTTCCAAC ACATTTCCCG
AAGTCATCCA TTGGCATTGA GAATGAGTTA GCTGGTCTAG TGGTGGCTAT GCCAGCCAAC
TCGGCACAGA AATTTGGCTA CGTGAAAAGT GCACAAGGTG ATGCGCTGTT TATGTTAACG
AAAGACATGA ACCAAGGTTC GTATCAGCGG CCACCTTCAT TACAAGATGG AAAAAATTAT
CAGAATTGGC AGACGCATAC AGTAGAGTTG GTGAGCTACC CTTGTGAAAT GGACGATAAA
GCTGCCGTTG AAACACGCAA ACAAGCCATG TTGTGGTTAG CAACCCACTT TACTACGCAT
ATCGACCAGT CCAATCATCA ACCATTAGCT CCTATTCAAA GTGAAGACGG ACGCTTTGTT
ATCGAAATCA CTAATGCGAA GCATGTGATT GCTGCGGGCA ATGGGATTTC TGCAGAATCT
CAAGGTCAAA CAATCACGAT GACACCAAGT GGACAACAAG CCACAGTGGG TGTTGCTGCT
AAAGGTTTCG GGACGAGTGC AACGCCAGAA TTAAGGTTAC TTGAATCGGC ACCTTGGTAT
CAGAAATCAC TCAAGAGCCA ATTTGCATCT CTAACGAGCG CAGAAAACTT GGATGATAAA
GAGTTAGCTG CAAACGTATT TGCTTATCTG ACGTCTATTT ATTTAAAAAC AGCAGAGCTA
GCGAAGAAGT TTGGTATTTA CATCAATGAA TGGGACCCCA TGTCGGAGCA AATTACTCCA
AATGCGAATG GATTAACGGA TCCAAAAGTA AAAAATGCAT GGGAAATATT GCCACGTACA
AAACCAAGCA AAATAGTAGA AATACTCAGT AAGAGTGATG CCAAAGCGGT TATGAAACAT
ATCAAGCCTC AATTGCAGTC TCGCTATTCT GAGAGTTTGT CGAAAAATGT ATTTCAATAT
TTCCAAGATG GTGGTGAAGT AGCCGGACAC GGTATTAATA ATGCGACGGT CGGTGATAAA
CATAGTCCGG AATTGGCGAT TTTGTTTGAG TTCAGAACTG TTCCGAATGA ACTGCAAAGT
TATTTGCCTA AAACAGAATC GACAACTAAG TCAGAAGTGA AGTTACTCGA TCAGTTTGAT
CCTATGAAGC GTAAAACAGT AATTCAACAA GTAGAATCGC TTGTGTAA
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| Protein sequence | MATLAYSIEV EGLEDETLVV RGFHGQESLS NSVFLGQACY GFRYEVQLAS RVSNLTAEQM
VDKRAELKLY RNSQLVQRVH GIVRAFSQGD IGHHHTFYQL TLVPALERLS LRHNSRIFQK
QTVPEILSIL LQEMGINDYA FALKRDGVQR EFCVQYRESD IDFLHRLAAE EGLVYSFVHE
AGKHTLYFSD ASDSLSKLPE PIPYNALVGG AIDTPYIHGL TYRTQAEVSE VQLKDYSFKK
PAYSFLQTVQ GTELDYQQTR YQHFDAPGRY KDDVNGAAFS QIRLDYLRRH AHTATGQSNE
PLLRAGYKFD LQEHLDPAMN RDWVVVSINH QGEQPQALQE DGGSGATTYS NQFSLIPGHL
HWRAEPQPKP QVDGPMIATV VGPEGEEIFC DEHGRVKIHF PWDRYSNGNE QSSCWVRVSQ
GWAGSQYGFI AIPRIGHEVI VEFLNGDPDQ PIITGRTYHA TNTPPYTLPE HKTKTVLRTE
THQGEGFNEL SFEDQAGKEQ IYLHAQKDFD GLIENDQFTQ IKHNQHLTVE WESREAVTGE
QVLSIEGSLH VKTGKVRVNE AGTEIHVKAG QKVVIEAGSE ITVKAGGSFV KVDPAGVHLS
GALVNLNSGG SAGSGSGFGG AMPALPGGLE PAVALAPPQT ISYQALLQAE QANVPAVKVC
PLAAQEATPA VNSITPPPPP PIAPPMAPPQ PIMNPQPTAN AQPNLGRSTK ATPDFPTHFP
KSSIGIENEL AGLVVAMPAN SAQKFGYVKS AQGDALFMLT KDMNQGSYQR PPSLQDGKNY
QNWQTHTVEL VSYPCEMDDK AAVETRKQAM LWLATHFTTH IDQSNHQPLA PIQSEDGRFV
IEITNAKHVI AAGNGISAES QGQTITMTPS GQQATVGVAA KGFGTSATPE LRLLESAPWY
QKSLKSQFAS LTSAENLDDK ELAANVFAYL TSIYLKTAEL AKKFGIYINE WDPMSEQITP
NANGLTDPKV KNAWEILPRT KPSKIVEILS KSDAKAVMKH IKPQLQSRYS ESLSKNVFQY
FQDGGEVAGH GINNATVGDK HSPELAILFE FRTVPNELQS YLPKTESTTK SEVKLLDQFD
PMKRKTVIQQ VESLV
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