| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1020 |
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| Symbol | |
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| ID | 5136171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1060096 |
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| End bp | 1061550 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640532478 |
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| Product | putative multidrug resistance protein |
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| Protein accession | YP_001216966 |
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| Protein GI | 147673563 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAATA GCGTTCAAAC GGTAGGTTTG TTGCATAAAG CAGCGCCTTA TTTTACGGCT
TCTCTATTGA GTGCTTTCGT TTTAACGGGT TGCTCAGTAC CCGATCATTA CCCTGATCTT
GCGACGATGT GGGAAGCGAA TGAGCTTAGC TCGACAAACA CATTTTCTCA CCAAGCTGAA
ATGGACTGGC CATCAGTGAA TTGGTGGCAA CGCTATCAAG ATGCACAATT AAACCATCTG
ATTGAGGAAG CGTTGCAGCA CTCACCATCG TTAGAGATGG CAATGGCTCG GCTTAAAGGG
GCACAAGGTT TTGCTCGTCA AGCAGGCGCA ATTCGATCAT TTGATCTCGG GTTAGCGGCA
TCCGCCACGG AAAGTAAAGT CAGTGAACGT TATCAATCTG CTACGCCTCC CGATGGTTGG
AATGACTATG GCACTCTAAC CTTGAATTTT CAGTATGACT TTGACTTTTG GGGAAAAAAT
CGCGCAGCGG TTGTTGCGGC GACTTCCGAG CTTGCTGCCG CTGAGGCAGA GAGTGTGGCT
GCGCGTTTGA TGATCAGCAC ATCGATTGCT AATGCTTATG CCGAATTAGC TCGTCTTTAT
GCCAATCAAG AGACCGTGCA TGCCGCGCTA CAAGTGCGCA ACAAAACCGT TGAGCTTTTA
GAAAAACGTT ATGCCAATGG CTTAGAAACG CTAGGTTCTG TCAGCCAAGC GAAAGCGGTT
GCTGCGAGTG TGGAAGCGGA GTTGCTTGGT ATTCAAGAAT CGATCCAATT ACAGAAAAAT
GCTTTGGCCG CTTTGGTGGG GCAAGGGCCT GATCGCGCTG CATCGATTGA AGAACCCCAT
ATCACCTTGA CCTCTCGTTA TGGCTTGCCG TCGGAGGCTG GCGTTGGATT ACTGGGGCAT
CGTGCTGATA TCACCGCTGC GCGTTGGCGG GCAGAAGCCG CAGCACAGCA AGTCGGTATT
GCGCAAGCAC AATTCTATCC AGATGTCACT TTGTCAGCGT TTATTGGTTA TCAGGCATTT
GGTCTGGATC ATTTGTTTGA TAGTGGTAAT GACGCAGGTG CAATTGGGCC TGCGATCTAC
TTACCACTAT TTACGGGTGG GCGTTTAGAG GGGCAGTTGA CTTCGGCAGA AGCTCGTTAC
CAAGAAGCGG TCGCTCAATA CAATGGCACG TTAGTGCAAG CCTTGCATGA AATCGCCGAT
GTGGTGACCA GTAGCCAAGC TCTGCAAGCG CGAATTAATA AAACCGAACA AGCCGTACAG
CAAGCTGAAC AAGCACTGCA TATCGCGACG AACCGTTATC AAGGCGGTTT AGCCACCTAT
CTCGATGTTT TGGTAGCTGA AGAGTCTTTA CTCAATAACC AAAGAGCATT GGTCAATTTG
CAGTCACGCG CTTTTAGTTT AGATCTTGCG CTGATCCATG CGCTAGGCGG CGGTTTTGAA
ACAACAGAAT CTTAA
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| Protein sequence | MKNSVQTVGL LHKAAPYFTA SLLSAFVLTG CSVPDHYPDL ATMWEANELS STNTFSHQAE
MDWPSVNWWQ RYQDAQLNHL IEEALQHSPS LEMAMARLKG AQGFARQAGA IRSFDLGLAA
SATESKVSER YQSATPPDGW NDYGTLTLNF QYDFDFWGKN RAAVVAATSE LAAAEAESVA
ARLMISTSIA NAYAELARLY ANQETVHAAL QVRNKTVELL EKRYANGLET LGSVSQAKAV
AASVEAELLG IQESIQLQKN ALAALVGQGP DRAASIEEPH ITLTSRYGLP SEAGVGLLGH
RADITAARWR AEAAAQQVGI AQAQFYPDVT LSAFIGYQAF GLDHLFDSGN DAGAIGPAIY
LPLFTGGRLE GQLTSAEARY QEAVAQYNGT LVQALHEIAD VVTSSQALQA RINKTEQAVQ
QAEQALHIAT NRYQGGLATY LDVLVAEESL LNNQRALVNL QSRAFSLDLA LIHALGGGFE
TTES
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