| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0997 |
|---|
| Symbol | hrpA |
|---|
| ID | 5136932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1031378 |
|---|
| End bp | 1035307 |
|---|
| Gene Length | 3930 bp |
|---|
| Protein Length | 1309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640532455 |
|---|
| Product | ATP-dependent RNA helicase HrpA |
|---|
| Protein accession | YP_001216943 |
|---|
| Protein GI | 147674840 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACTTCGT CACAGCCCAC ACCCGATTCG GCAGCTCAGC CAAAAGCCAA TAGTGCTGCC
AGTTTAAAAA AGGCGCTCGG AGAGTGCCTG ATCAAAGATC GTTTTCGTTT TAGTAAACGC
ATTGATGGTG CCAGTAAAAT TAAAAATGAA TCGGCACGCA ACGCAGTATT TGACGAAATC
GCGCTCGATA TTGCGCAATC CATGATGGTG GTGGAGCAGC GCAAGCAACA AATGCCAAAA
ATCGAGTATC CCGCTCTGCT GCCAGTCAGC CAAAAACGTG ATGATATTGC GCAGGCGATT
GCTCATCATC AAGTGGTGAT CGTGGCCGGT GAAACCGGTT CAGGCAAAAC CACTCAGCTA
CCGAAAATTT GTGCAGAATT AGGCCGTGGT AAATACGGTT TGATTGGCCA CACTCAGCCG
CGCCGTCTTG CTGCGCGATC AGTGGCAAAC CGCATTGCCG AAGAGATGGA AACCGAACTC
GGTGGCTTTG TTGGCTACAA AGTGCGTTTT ACCGACCAAA TCTCTGATCA GACTCAAATC
AAATTGATGA CTGACGGTAT CTTGCTGGCG GAGATCCAAA ACGATCGTTT CCTTAACCAG
TACGACACCA TCATTATCGA TGAAGCGCAC GAGCGCAGCC TCAACATCGA CTTTATCTTG
GGCTATCTCA AGCAGCTTTT GCCGCGTCGT CCCGATCTCA AAGTCATCAT CACCTCGGCG
ACCATCGACC CTGAGCGCTT CTCGAAGCAT TTTAGCAATG CGCCGATCAT CGAAGTCTCA
GGCCGTACTT ATCCGGTGGA AGTGCGCTAT CGCCCTCTTA CGGGGGATGA TGACAGTGAA
AGCGATCGCG ACCAACTGGA AGGCATTTTC CAAGCGGTGG ATGAGCTGTG CGATGAAGGA
TTGGGCGACA TTCTGATCTT CATGAACGGT GAGCGCGAAA TTCGTGATAC CGCGGATGCG
CTTTCAAAGC GCAACCTGCG TGATACGGAA ATTGTGCCAC TGTATGCACG TTTGTCAGCC
GGTGAGCAGA ACAAGATTTT CCAACCTCAT GCGGGTCGTC GCATTGTGCT GGCCACCAAC
GTGGCGGAAA CCTCGCTAAC GGTTCCGGGC ATCAAATACG TTATCGACCC AGGTACCGCG
CGTATCAGTC GTTACAGCTA TCGCACCAAA GTGCAGCGTT TGCCGATTGA GCCGATTTCC
CAAGCCAGCG CTAACCAGCG TAAAGGCCGC TGTGGACGTA CCGAAGAGGG GATCTGTATC
CGCCTCTATT CGGAAGAGGA TTTCTTGTCA CGCCCTGAGT TTACTGACCC TGAGATTCTG
CGCACCAACT TAGCCTCGGT TATTTTGCAG ATGACGGCAT TGGGGCTAGG CGATATTGAA
GCCTTCCCCT TTGTGGAAGC GCCAGATAAG CGCAACATTC AAGATGGCGT GCGTCTGCTC
GAAGAGTTAG GGGCGATCAA CGATCAAATC AAAGACCCGA AAAAACGCCT CACCGAAAGT
GGTAAGCAGC TAGCGCGTTT GCCGATTGAT CCACGTTTGG CACGCATGGT GCTCGAAGCG
TCTAAATTAG GCTGTTTGAA AGAAGTGATG ATTATTGCTT CCGCGTTGTC GATTCAAGAT
CCGCGTGAAA GACCGAGCGA CAAGCAGCAA TCGGCCGATG ACAAACATCG CCGTTTTAAC
CATGAAGATT CAGATTTCCT AACGTTAGTG AACCTATGGC ACTACATCGG ACAGCAGCAA
AAAGCGTTGA CCAGTAACCA GTTCCGCCGT CAGTGTAAGC TTGACTATCT CAACTATTTG
CGCGTGCGTG AATGGCAGGA TGTGTACACC CAACTGCATC AATCGACTCG GGAAATGGGT
TTTAAGCTCA ATGATGAACC GGGCAGTTAC CATGCGGTGC ACAGTGCGAT CTTGGTCGGT
TTGTTGTCGC ACATCGGTAT GAAAGATCAG GAGAAGAACG AGTACCACGG CGCACGTAAC
GCACGTTTCA ACATTTTTCC TGCCTCTGGC TTATTTAAAA AGCAGCCGAA ATGGGTCATG
TCGGCAGAGC TGGTGGAAAC CTCCAAACTG TGGGCGCGCG TGGTTGCGAA AATCGAACCG
GATTGGATTG AGCCACTAGC GAAACACCTG AGCAAGCGCA GTTACAGTGA GCCACATTGG
TCGAAGAAAA ATGCGGCGGT GATGGCGTAT GAAAAAGTGA TGCTGTACGG CATCCCGATT
GTTCCCAAGC GCTTGGTCAA CTATGGCACG ATTGATCCTG TGCTCAGTCG CGAAATTTTC
ATTCGCAGCG CACTGGTAGA AGGGGATTGG GAAACCAAAC ACGCCTTCTT CAAACAAAAC
CGCGCGCTAC TCGCCGAAGT GGAAGAGTTA GAACACAAAT CGCGTCGCCG CGATATTCTG
GTTGATGATG AAGAGTTGTT CCAATTCTAC GACCAGCGTG TCGGTACCGA AGTGGTGTCT
GGTCGCCATT TTGATGCGTG GTGGAAAACC GCTAGTCGTA AAACGCCGGA TCTGCTCAGC
TTTGAAAAAG AGATGCTGTT CAAAGGCGAT GCCAGCCACA TTACCGATCT GGATTACCCG
AATTTCTGGC ATCAAGGCAA TCTGAAACTC AAACTCAGTT ACCAGTTTGA GCCGGGCGAG
AACAGTGACG GTGTGACGGT ACACATTCCG CTGCCAATCT TAAATCAAGT TGAGCCACAT
GGCTTTGACT GGCAGATTCC CGGTTTGCGC CATGAGTTGG TGGTGAGCTT AATTAAATCG
CTACCGAAAA CGCTGCGTAA AAACTTTGTG CCAGCCCCCA ATTACGCTGA CGCTTTTTTG
GCGCGTGTAA CACCGTTTGA AATGCCGCTG CTCGATGCAA TGGAAAAAGA GCTGCGCCGC
ATGACGGGTG TGACGGTGCT GCGTGAAGAT TGGAAACTCG ATCAACTGCC TGCGCATTTA
AAAATTACTT ATCGCGCGGT GGATCATCGC AATCGCAAGC TCAATGAAAG CTGCGATCTG
CATGAGCTGA AAGAGAGCTT GAAAGAGAAA GTGCAAGAGA CACTTTCACA AGTGGCCGAT
GACGATATCG AGCAGCGCGA TCTGCATACG TGGTCGTTTG GTGAGCTACC GAAAGTGTAC
CAGCAAAAGC GTGGTGGCTT TGAAGTTAGA GCTTATCCGG CGTTAGTCGA TAAGAAAGAC
AGCGTCGAAA TCAAACTGTT TGAAACCGAG CAAGAGCAGC TTAGCGCGAT GCGTGCCGGT
CAGCGCCGTT TGATTTTGCT TAACGTGCCA TCACCGATCA AATATCTGCA CGCCAATCTG
CCGAACAAAT CTAAACTCGG TTTGTACTTT AACCCGTATG GCAAAGTGCT CGATTTGATT
GATGACTGCA TTGCCTGCGG CGTTGATAAG CTGATTGAAG AGCGCGGCGG CATGGTGTGG
GAGCCACAAG CATTTGAAGC GCTCAAAGAG CATGTGCGTG CCGAGCTTGG CGATACAGTA
GTTGAGATTG CCAAGCAGGT AGAAACCATT TTGACCACGG CTTACAACAT CAATAAGCGT
TTGAAAGGTA AGGTGGATTT CACGATGGCG TTTGCGCTTT CTGATGTGAA AGCACAAATC
GAAGGGCTGA TTTTCAGCGG CTTTGCGACT GAGTGCGGTT GGAAACGTCT GCCGGACATT
CTGCGTTACA TGCGCGCGAT TGAACGCCGG ATGGAAAAAC TGCCGGTCGA TCCCAACAAA
GATCGTCTGC ATATGCTGAA AATTGAATCG GTAGCCAACA AGTATAAAGA GCTGCTGAAC
AAGATCCCGA AAGGGATGGC GATTCCCGAT AACGTGCGAG AAATCCGCTG GATGCTCGAA
GAGTTACGCG TGAGTTATTT TGCTCAGCAA TTGGGTACGC CGTATCCGGT TTCGGATAAG
CGGATCATCA ACGCGATTGA GGCTTGTTAG
|
|---|
| Protein sequence | MTSSQPTPDS AAQPKANSAA SLKKALGECL IKDRFRFSKR IDGASKIKNE SARNAVFDEI
ALDIAQSMMV VEQRKQQMPK IEYPALLPVS QKRDDIAQAI AHHQVVIVAG ETGSGKTTQL
PKICAELGRG KYGLIGHTQP RRLAARSVAN RIAEEMETEL GGFVGYKVRF TDQISDQTQI
KLMTDGILLA EIQNDRFLNQ YDTIIIDEAH ERSLNIDFIL GYLKQLLPRR PDLKVIITSA
TIDPERFSKH FSNAPIIEVS GRTYPVEVRY RPLTGDDDSE SDRDQLEGIF QAVDELCDEG
LGDILIFMNG EREIRDTADA LSKRNLRDTE IVPLYARLSA GEQNKIFQPH AGRRIVLATN
VAETSLTVPG IKYVIDPGTA RISRYSYRTK VQRLPIEPIS QASANQRKGR CGRTEEGICI
RLYSEEDFLS RPEFTDPEIL RTNLASVILQ MTALGLGDIE AFPFVEAPDK RNIQDGVRLL
EELGAINDQI KDPKKRLTES GKQLARLPID PRLARMVLEA SKLGCLKEVM IIASALSIQD
PRERPSDKQQ SADDKHRRFN HEDSDFLTLV NLWHYIGQQQ KALTSNQFRR QCKLDYLNYL
RVREWQDVYT QLHQSTREMG FKLNDEPGSY HAVHSAILVG LLSHIGMKDQ EKNEYHGARN
ARFNIFPASG LFKKQPKWVM SAELVETSKL WARVVAKIEP DWIEPLAKHL SKRSYSEPHW
SKKNAAVMAY EKVMLYGIPI VPKRLVNYGT IDPVLSREIF IRSALVEGDW ETKHAFFKQN
RALLAEVEEL EHKSRRRDIL VDDEELFQFY DQRVGTEVVS GRHFDAWWKT ASRKTPDLLS
FEKEMLFKGD ASHITDLDYP NFWHQGNLKL KLSYQFEPGE NSDGVTVHIP LPILNQVEPH
GFDWQIPGLR HELVVSLIKS LPKTLRKNFV PAPNYADAFL ARVTPFEMPL LDAMEKELRR
MTGVTVLRED WKLDQLPAHL KITYRAVDHR NRKLNESCDL HELKESLKEK VQETLSQVAD
DDIEQRDLHT WSFGELPKVY QQKRGGFEVR AYPALVDKKD SVEIKLFETE QEQLSAMRAG
QRRLILLNVP SPIKYLHANL PNKSKLGLYF NPYGKVLDLI DDCIACGVDK LIEERGGMVW
EPQAFEALKE HVRAELGDTV VEIAKQVETI LTTAYNINKR LKGKVDFTMA FALSDVKAQI
EGLIFSGFAT ECGWKRLPDI LRYMRAIERR MEKLPVDPNK DRLHMLKIES VANKYKELLN
KIPKGMAIPD NVREIRWMLE ELRVSYFAQQ LGTPYPVSDK RIINAIEAC
|
|---|
| |