| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0967 |
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| Symbol | |
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| ID | 5136764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 1000308 |
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| End bp | 1003238 |
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| Gene Length | 2931 bp |
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| Protein Length | 976 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640532425 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001216913 |
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| Protein GI | 147673928 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG3292] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.1127 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGGAA TTAGGCTTTT AGCTTGCTGC GGAGTGCAGA TCTGTTCAGT GTTTTTGCTG
ATCATCAGTT CATCTGCTTA TGCCGTAGTC GAACATATTT CGGACTATTT CGTGGAGACG
TGGACTTCCA CTGATGGTTT ACCGCACAAC AGTATTAATA GTATTGCCCA GACACGCGAT
GGTTATTTGT GGTTTGCCAC TTGGGAAGGC GTGGTGCGAT ATAACGGCAT CAATTTTCAA
GTGTTTGATC GCAATCCACA AACTGGAATG GTTGACTCCG GAACTCGCAC CTTATTACCC
ATGGATAACA ATGGGTTGTT GGTGGCTGGT GCTCGAGGGA GTATCACGCA CAGACAGAGT
TATGGCTGGC AATCTTTTCG TTCTGCGCCC AGTTTAGTCA ATGGTGCATT GATTGATGAT
GCACAAAACT TGTGGCTCGC GATTGAAGGT CTCGGCGTCG TAGTCCGACC TTATTTGGGT
AATAACCTCT ATGGGCCTGA TCGATGGTTA CTGACTGATG CCAGTGTGTA TCGTTTAGTA
AAAAATCAGC ATGGAGTGAT TTTTGCGGCC ACCGATAAAG GGTTGTATCG CTTTAATGAT
TGGCAAGCGT CAGCCATGGA ACTGCCGATT GGGCGCTATG AGCGAATTAA CTATATTTCC
ATCAGTTTGA ATCAAGAACT TGTCGTGGCA ACAGATCAAG GTGTTTGGAT CAATACTGAA
GAAGGCTTCC AATCGTTGTT TGTACCGCTT GAGAAAGAGG TGGTGACGCT GGCGGAGCAA
GATCGTGCCG GGAACTGGTG GATTGGCACG GTTAATCGCG GCATTGCACG TTTGAAAAAT
CAGCAACTGC AATTTTTGGA GCCTAGTCGA GGTTTGCCTT ATAGCCGAGT GCTTTCTTGG
TATCAGGATA TCGAAGGCAG TGTATGGGTG GGGACCAATG CTGGCATTAT GCGACTGCGT
GATGCGCCTT TCATTAATAT CAACAGTGAT AAAGGATTAG TGGGCGATTA TGTCCGAACC
TTGTTGCCGC TAGATGACCG ACGAGTTATG GTCGGTACCA GTCGTGGATT AAGCATTATT
GAAGAGGGCT TGGCACATAG CGCGTTAATG CCTCAAGTCG GTGCTCGTCC TTCGATACTC
AGTCTGGCCA AAGCAGACCA GCAAGGTGAA AAAGTCTGGG TTGGGACGGT ACAAAAAGGA
TTGCTCCTTT GGCAAAACGG CCAGTTGCGT CCTGTGCTAG ATGAAAATAA CGGTTTGCCA
AGCAGCGAAG TCAGAGCCAT CGTCACCGAT CCACAAGATA ATCTTTGGAT TGGTACTTCA
AATGGTATTG TCAAAAGAAC GCCGCAAGGT GTGCTGACGA CATACAACAA AGACAACTCC
CCCCTGCCTG ATGATTACAT CATGGCACTC GCTGTGGATT CGGAAGGGAA GCTGTGGGTT
GGTAGTGCCG TTGGTGTGGC TTATTTTGAT GCTCAAGGCA AGATTCGTCC GGTTGATCTT
ACTAAGCAAG AGCAAGCACA GTATGTGTTT GGCTTCTACA TGGAATCCGA TTATGTCTGG
ATGGCCACAG ACAGAGGCAT CGTGCGTTAT CGCTTGAGTG ATGCAAGCGT TTCCCTTGTG
GGTCGTGCCG CAGGCTTACC AATCGATAAA TTCTTCCAAA TGCTACGTGA TAGTGAAGGG
CATGTGTGGC TATCCAGCAA CCGTGGGGTA TGGAAGCTCA ACTATGATCA GATGTTAGCG
GTCGCTGATG GCATGAGCAC ACAGCTTGAA TTCGAACATT TTGATGAAGG TGATGGCATG
GCAACCAGTC AGGCGAATGG AGGGACCAAC CCTGCGTCTG CAAGTTTGCC AAATGGTGAG
CTGCTTTTTG CCACTGCGAA AGGGGTGGCG AGCATCAAGG TACAGCGTCT CCAGCAACTG
AGTGAACTGC GTTTACCGGT CGTTCTAGAA TCGGTCAGTT TTGACAGCGA GATTATCAAT
CCTGATCAGC AGTACATTGC TGCGGCTGGA ACCAATCGGG TGAGCTTCGG ATACGTGGGG
CTAGGTTTTG TGATGTCAGA GCGTTTGCAA TATCGCACGA AACTTGAAGG GTTCGATCGA
GATTGGTCAT ATCGGGGTCA TAATACCCAA GCGGAATACA CCAATTTAGC GCCGGGTAAA
TATCGATTCT TTGTCAGCGC CCGTTATCCG TATGGTGAGT GGAATGATGC CACGTTTAGT
TACGTATTTA TCATTGAACC TCATTGGTGG CAGCGTAAAG AGGTGATTGT CATGGCTGGC
ATGCTGTTTT TGGCGCTGGC GGTGTCACTG GTGATGTGGC GAATTCGTAT TTTGAAACGG
CGTGAGTTGT ATCTCGTTGA GCAGGTTGCG CTGCAAACCC AAAAATTGCG CCTACAAGCG
GAAAAGTTTG AGAGACTCTC GAAAGAAGAT GATTTAACTG GGCTTGCCAA TCGCCGCGCA
TTTGATATGT ACCTCAAACA AGCCTTTTCT CGTCTGCAAA ATCCAGATCA GCAAGTCAGT
ATTGCGCTGC TGGATATTGA TCACTTCAAG CAGATTAATG ATCGTTATTC GCACATTATC
GGCGACCAAG CCATTGTAGC GGTATCACAA GAGTTACTTG GGTATGTTGG CGACAAAACC
CGAGTGGCGA GATGGGGCGG TGAAGAGTTC ACCATCTTAT ATGTAGGAGA TCCTAAGCAA
GCTTGGGGTT ATTTTGAAAA GCTGCGTTGT AAGATTGAAC AGGTTGATTT GTCTGCAGTA
GCACCGGGAT TAAACGTGAC AGTGAGTATT GGCTTTGCCG ATGCGCAGCA GGCGGAGAGT
TATGAAACCG TTTTGAAGCT GGCGGATCAT GCATTATTGA CGGCGAAGAA ACTCGGGCGT
AACCGCGTGG TGAAAAGTGA AGAGTGGCAA GTAAAAAGCG GCCTCCATTG A
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| Protein sequence | MTGIRLLACC GVQICSVFLL IISSSAYAVV EHISDYFVET WTSTDGLPHN SINSIAQTRD
GYLWFATWEG VVRYNGINFQ VFDRNPQTGM VDSGTRTLLP MDNNGLLVAG ARGSITHRQS
YGWQSFRSAP SLVNGALIDD AQNLWLAIEG LGVVVRPYLG NNLYGPDRWL LTDASVYRLV
KNQHGVIFAA TDKGLYRFND WQASAMELPI GRYERINYIS ISLNQELVVA TDQGVWINTE
EGFQSLFVPL EKEVVTLAEQ DRAGNWWIGT VNRGIARLKN QQLQFLEPSR GLPYSRVLSW
YQDIEGSVWV GTNAGIMRLR DAPFININSD KGLVGDYVRT LLPLDDRRVM VGTSRGLSII
EEGLAHSALM PQVGARPSIL SLAKADQQGE KVWVGTVQKG LLLWQNGQLR PVLDENNGLP
SSEVRAIVTD PQDNLWIGTS NGIVKRTPQG VLTTYNKDNS PLPDDYIMAL AVDSEGKLWV
GSAVGVAYFD AQGKIRPVDL TKQEQAQYVF GFYMESDYVW MATDRGIVRY RLSDASVSLV
GRAAGLPIDK FFQMLRDSEG HVWLSSNRGV WKLNYDQMLA VADGMSTQLE FEHFDEGDGM
ATSQANGGTN PASASLPNGE LLFATAKGVA SIKVQRLQQL SELRLPVVLE SVSFDSEIIN
PDQQYIAAAG TNRVSFGYVG LGFVMSERLQ YRTKLEGFDR DWSYRGHNTQ AEYTNLAPGK
YRFFVSARYP YGEWNDATFS YVFIIEPHWW QRKEVIVMAG MLFLALAVSL VMWRIRILKR
RELYLVEQVA LQTQKLRLQA EKFERLSKED DLTGLANRRA FDMYLKQAFS RLQNPDQQVS
IALLDIDHFK QINDRYSHII GDQAIVAVSQ ELLGYVGDKT RVARWGGEEF TILYVGDPKQ
AWGYFEKLRC KIEQVDLSAV APGLNVTVSI GFADAQQAES YETVLKLADH ALLTAKKLGR
NRVVKSEEWQ VKSGLH
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