Gene VC0395_A0952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0952 
SymbolprpB 
ID5135508 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp978192 
End bp979088 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content53% 
IMG OID640532410 
Product2-methylisocitrate lyase 
Protein accessionYP_001216898 
Protein GI147673607 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2513] PEP phosphonomutase and related enzymes 
TIGRFAM ID[TIGR02317] methylisocitrate lyase 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTAA GTCCTGGCGC CAAATTCAGG CTGGCAGTGA AAACCCATCA TCCACTGCAA 
ATCGTCGGCA CCATCAACCC TTACTGCGCC ATGATGGCGA AAAGTATCGG CCATCAAGCG
ATTTATCTCT CTGGCGGTGG CATTGCCAAT GCCTCGTACG GCTTGCCAGA TTTGGGCATC
ACCACACTCA ATGACGTGTT GGTAGATGTG GAACGCATCA CCAACGCCTG CGATTTGCCT
TTGCTGGTGG ATATTGATAC CGGCTTTGGC GGCGCATTTA ACATTGCACG CACCATCAAA
GCGATGGAGA AAGCCGGAGC CGCGGCGGTA CACATGGAAG ATCAGGTGGC GCAAAAACGC
TGTGGTCATC GTCCGAATAA AGCGATTGTT AGCCAGCAAG AGATGGTGGA TCGCGTCAAA
GCCGCAGTGG ATGCGCGCAT CAATCCTGAG TTTGTGATCA TGGCGCGCAC CGATGCCTTA
GCGGTAGAAG GTATGGATAG CGCGATTGAA CGAGCGATCG CCTGTGTGGA AGCGGGCGCG
GACATGATTT TCCCTGAAGC CATGACCGAG CTGAAACAGT ACGAACAGTT CTCAACGGCA
CTGCGCAGTG CTACCGGTAA ACCTGTGCCG ATTTTAGCCA ACATTACCGA GTTTGGTCAG
ACACCCCTTT ACAGCGGTGA GCAATTGGCG GCGGTGAATG TGGATATGGT GCTGTACCCA
CTCAGCGCTT TCCGAGCCAT GAATAAGGCG GCGGAAAATG TGTATCGCCA CTTGCTGGAA
CACGGGAATC AGGAAGCGTT GCTCGATCAA ATGCAAACGC GCAAAGAACT TTACGCTTAC
CTGCATTACC ACGAATACGA AGACAAGCTG GATCAGCTGT TTTCACAACC CTCTTAA
 
Protein sequence
MSLSPGAKFR LAVKTHHPLQ IVGTINPYCA MMAKSIGHQA IYLSGGGIAN ASYGLPDLGI 
TTLNDVLVDV ERITNACDLP LLVDIDTGFG GAFNIARTIK AMEKAGAAAV HMEDQVAQKR
CGHRPNKAIV SQQEMVDRVK AAVDARINPE FVIMARTDAL AVEGMDSAIE RAIACVEAGA
DMIFPEAMTE LKQYEQFSTA LRSATGKPVP ILANITEFGQ TPLYSGEQLA AVNVDMVLYP
LSAFRAMNKA AENVYRHLLE HGNQEALLDQ MQTRKELYAY LHYHEYEDKL DQLFSQPS