| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0919 |
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| Symbol | sdaC-1 |
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| ID | 5136922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 939934 |
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| End bp | 941187 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640532377 |
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| Product | serine transporter |
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| Protein accession | YP_001216865 |
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| Protein GI | 147673147 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0814] Amino acid permeases |
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| TIGRFAM ID | [TIGR00814] serine transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000000110337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACTA CAACAGCGGC TACTTCTACA GCACGTTCTG CTAGCAAGTG GACCTACAAA
GATTTCACCT GGGCTCTGTC CCTTTTCGGT ACAGCGGTTG GTGCAGGTGT CCTGTTCCTA
CCTATTAAAG CGGGTGCGGG TGGCTTCTGG CCATTAGTTC TTCTCGCACT GATTGCCGCC
CCAATGACTT GGTTTGCACA CAAGTCTCTC GCTCGTTTCG TATTATCTGC AAAAAATCCT
GATGCAGACA TCACTGACAC GGTTGAAGAA CATTTTGGTA AAGCTGGCGC TAACCTCATT
ACTTTTGCTT ACTTTTTCGC CATCTATCCT ATCGTTCTGA TCTACGGTGT GGGCATCACT
AACACGGTGG ATTCTTTCCT CGTTAACCAA ATCGGCATGG AATCGATTCC TCGCTGGTTA
CTATCTGGTG CACTGATCAC GGCGATGACT GCTGGTGTGG TATTTGGTAA GGAGCTGATG
CTGAAAGCCA CTTCTGCCAT GGTTTACCCA CTGGTATTCA TTCTGCTGGC TCTCTCTTTC
TATCTGATCC CTGATTGGAA CACTTCCATG ATGGAAGTCG CACCTGACTG GTCAGCAATG
CCTGCTATCG TATGGCTTGC GATCCCAATC ATCGTGTTCT CTTTCAACCA CAGCCCAATC
ATTTCTCAGT TCTCTAAAGA GCAACGCCAA CAGTTTGGTG ATAAAGCCGT ACAAAAAACG
GACATGATTA CTGGCGGTGC AGCGATGATG CTGATGGGCT TCGTGATGTT CTTCGTATTC
TCGGTAGTTC TATCACTGTC TCCTGCAGAG CTGGCGATGG CAAAAGAGCA AAACATCTCT
GTTCTGTCTT ACCTAGCTAA TGAACACGCT TCACCGATCA TCTCTTACTT AGGTCCAATC
GTGGCATTTG CAGCGATCAC CTCAAGCTAC TTCGGTCACT TCTTAGGTGC TCATGAAGGT
CTAGTCGGTC TGGTGAAATC ACGCAGCAAC ATGCAAGTCA GCAAGATTGA GAAAATCTCT
CTGGGCTTCA TCGTCATCAC CACTTGGATT GTAGCAATTG TGAACCCAAG CATCCTAGGT
ATGATTGAAA CCATGGGCGC ACCAATGATT GCTGCTATCT TGTTCCTGCT GCCTGTATTT
GCAATGCACA AAGTGCCTGC AATGGCTAAG TTCAAGACTT CAGCACCTGT ACAGATTTTT
ACAGTTATTT GTGGCTTGGC TGCGATTAGT TCTGTAATCT ACGGCGCTCT TTAA
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| Protein sequence | MNTTTAATST ARSASKWTYK DFTWALSLFG TAVGAGVLFL PIKAGAGGFW PLVLLALIAA
PMTWFAHKSL ARFVLSAKNP DADITDTVEE HFGKAGANLI TFAYFFAIYP IVLIYGVGIT
NTVDSFLVNQ IGMESIPRWL LSGALITAMT AGVVFGKELM LKATSAMVYP LVFILLALSF
YLIPDWNTSM MEVAPDWSAM PAIVWLAIPI IVFSFNHSPI ISQFSKEQRQ QFGDKAVQKT
DMITGGAAMM LMGFVMFFVF SVVLSLSPAE LAMAKEQNIS VLSYLANEHA SPIISYLGPI
VAFAAITSSY FGHFLGAHEG LVGLVKSRSN MQVSKIEKIS LGFIVITTWI VAIVNPSILG
MIETMGAPMI AAILFLLPVF AMHKVPAMAK FKTSAPVQIF TVICGLAAIS SVIYGAL
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