Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0879 |
Symbol | |
ID | 5137285 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 892599 |
End bp | 893498 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640532337 |
Product | AraC/XylS family transcriptional regulator |
Protein accession | YP_001216825 |
Protein GI | 147674578 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.000031891 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACCTT TAATTGAAAA TGTGATGAGC GGTATTAGTC AGGATTGGGT GCTGCGTGAA TTTCGCAGCA AGAGCCAAAC TCAAGAATTT TCCTGTCCTT GGCACTACCA CACCGAATAT GAATTAGTGC TCTACCAGAA CCCTGATCAG CGTTTTGTCG GTAACTATTT TGCAGGGGAT GCGATTGGCG CGGTTGAGCA CAACACACTT TTACTTTACG GCCCCGGTTT ACCACATATG ATTGCGGGTA GACAGCTGAT CAATAAAGCC CAAACTCTGC ACTCAACGAT TATCTGGTTC AAACAAGAGT GGCTAGATAA GCTACAGAGC GTATTGCCTC AAGCTCAAGC TTTGCAACGC TTGCAGCAAC ATGCCTCCTA TGGCGTGCGT CTCAGTGAGC AAACCGCTAC GCGCGTCGCC GAACTCCTAG CCAATGTTGA TCAACAGCCT CACAGTTACC AATCTCTGCG CGTGATTGAG TCCTTGCTTG TGATGGCGGA CGATGCGCAG GCACAGCGTC TATCTGTCGC ACCCTATGTG ATGACGGCAC TCACCAGCAA CAGTGACACG CATAAGAAAA TTCAACTGGC CAAACAATAT GTGGAGCAGC ACTACGCACA AGCAATAAAA ATTACCGACT TATGTCATCA GTTACATTTG AGCGAAAGCT CGGCGTATCG CTTATTTGAA AAGCACTATG GGATGAGTTT TTCTGAGCAT TTAAAGCAGT TTCGAATTGG TAAAGCGTGT GAGCTTTTAG CCAGTTCTGC GCTGCCGATT GCATTAATTG CCGAGCGAAC TGGGTTTGGC AATTTGTCGA ACTTTAACCG CCAATTTAAA ACCCTCAAAA CCATGACTCC GAGAGAGTTT CGCCAACGAT TTCAAGCAGT AAGTGGGTAG
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Protein sequence | MRPLIENVMS GISQDWVLRE FRSKSQTQEF SCPWHYHTEY ELVLYQNPDQ RFVGNYFAGD AIGAVEHNTL LLYGPGLPHM IAGRQLINKA QTLHSTIIWF KQEWLDKLQS VLPQAQALQR LQQHASYGVR LSEQTATRVA ELLANVDQQP HSYQSLRVIE SLLVMADDAQ AQRLSVAPYV MTALTSNSDT HKKIQLAKQY VEQHYAQAIK ITDLCHQLHL SESSAYRLFE KHYGMSFSEH LKQFRIGKAC ELLASSALPI ALIAERTGFG NLSNFNRQFK TLKTMTPREF RQRFQAVSG
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