Gene VC0395_A0802 details

Gene Information

• Locus tag: VC0395_A0802
• Symbol: cydD
• ID: 5135304
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 812179
• End bp: 813966
• Gene Length: 1788 bp
• Protein Length: 595 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640532260
• Product: cysteine/glutathione ABC transporter membrane/ATP-binding component
• Protein accession: YP_001216752
• Protein GI: 147675398
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACAAGA AAAAACAGCG TAGCTTGAAT CTCTGGCTCA AGCAGCAAAG CAAACTGGCT 
AAGCGCTGGC TCGCAATAGC TGTTGGGTTG GGTGTGTTAT CAAGCCTATT TCTGGTGGCG 
CAAGCCGCAC TCCTTGCATC AATTCTGCAT CAGCTGATTA TTGAACAGGT CGATAAACAT 
CTGCTCATTC CACACTTCTT TGGCTTGGCT GCACTCATTG CCGTGCGTGC GCTCTGCTCT 
TGGGGACGCG AAATCGCTGG TTTTCGTTGT GGAGAAGAGA TCCGCCGTTA TATTCGACAG 
CTAATCCTAG ACAAGTTACG CGACTTAGGG CCAGCCTATA TCAAAGGCAA ACCGGCCGGC 
TCATGGGCAG CCTTAATGCT TGAGCAAGTC GAAAACATGC ACGATTTCTT TGCTCGCTAT 
CTCCCCCAGA TGTCTCTTTC GGTTTTGGTA CCGTTTGTGA TCCTTGCCGT CGTCTTCCCA 
GTGAACTGGG CGGCAGGACT GATTTTTTTG ATCACAGCGC CATTGGTGCC ACTCTTTATG 
GCGTTAGTTG GAATTAAAGC CGCCGATGCC AGCCGGAAAA ACTTTAAAGC TCTGCAGCGT 
TTATCCGGGC ATTTTTATGA TCGCTTGCAA GCCCTGACCA CTATTCGTCT ATTCGATCGC 
ACCACAGCAG AAACCGAGCA CATGCGCGGC GCTTCAGAAG TGTTTCGCCA TCGCACTATG 
GATGTACTGC GGATCGCGTT CCTCTCTTCT GCAGTATTAG AGTTTTTCAC CTCGATCTCC 
ATTGCACTGA CCGCCGTGTA CTTTGGCTTT AGCTACATTG GTGAACTCAA CTTCGGTTAT 
TACGGCGCGA GTGTCACTCT GTTTGCTGGA CTATTTGTGT TAATCCTTGC TCCGGAGTTT 
TATCAGCCGC TGCGCGATCT CGGAACCTAT TACCACGCCA AACAACTCGC GGTGGGCGCA 
GCCGAATCGA TCGTCGATTT TCTGCAAACC GAAGTGGATA CCTTACACAG CGGAGAGCGT 
CATCTCACCG ATAACGACGA TATTGAAATT ATCGCCAATG ATCTGGTCGT TCTTAGTCCA 
CAAGGCAAAC GCTTAGCAGG CCCGCTCTCA TTTACGTTGC AAAGCGGCAA AACCACCGCT 
CTCGTCGGGC CAAGTGGCGC AGGCAAAACC AGCTTAATCA ATACCATATT AGGCTTTATG 
CCCTACCAAG GCAGCTTAAC CATTAACGGC ATTGAATTGC GCGAGTTAGA TCATGCGCAG 
TGGCGACAAA CCATCAGTTG GGTTGGGCAA AATCCTCTGC TGCTGCATGG CACCATTCGC 
GACAACGTGA CGCTAGGCAA ACACAATATC GCCGATGATC AAGTCACACA GGCTCTGCAA 
GCAGCTTATG CCCAAGAGTT TGTTGAGCAG CAGGGTTTGG ATTACACGAT CAGTGATCGC 
TCTGCGGGGC TTTCCGTGGG TCAAGCCCAA CGCCTCGCCC TCGCTCGCGC TATTTTGCAA 
AATGGCCGCT TTTGGTTACT CGATGAACCC ACGGCAAGCT TAGATGCGCG CAGTGAGCAA 
TATGTGATGC GTGGACTGAC CGAAAGCATT CAGCAACGCA CTGCGTTATT TGTCACTCAC 
CAGTTGCAAC CGCTGCAATC GGTCGAGCAG ATCTTAGTGA TGGAAAATGG CTTGCTGGTA 
CAAGCAGGAC ATTTTGAAGA CTTAAGCCAG CAATCTGGTT TATTTGCCAC TATGTTAGCC 
GCTAACCAAG CGCTACAAGC TGCCAACAAA GGGGATCTCG ATGCGTGA 

 

Protein sequence

MDKKKQRSLN LWLKQQSKLA KRWLAIAVGL GVLSSLFLVA QAALLASILH QLIIEQVDKH 
LLIPHFFGLA ALIAVRALCS WGREIAGFRC GEEIRRYIRQ LILDKLRDLG PAYIKGKPAG 
SWAALMLEQV ENMHDFFARY LPQMSLSVLV PFVILAVVFP VNWAAGLIFL ITAPLVPLFM 
ALVGIKAADA SRKNFKALQR LSGHFYDRLQ ALTTIRLFDR TTAETEHMRG ASEVFRHRTM 
DVLRIAFLSS AVLEFFTSIS IALTAVYFGF SYIGELNFGY YGASVTLFAG LFVLILAPEF 
YQPLRDLGTY YHAKQLAVGA AESIVDFLQT EVDTLHSGER HLTDNDDIEI IANDLVVLSP 
QGKRLAGPLS FTLQSGKTTA LVGPSGAGKT SLINTILGFM PYQGSLTING IELRELDHAQ 
WRQTISWVGQ NPLLLHGTIR DNVTLGKHNI ADDQVTQALQ AAYAQEFVEQ QGLDYTISDR 
SAGLSVGQAQ RLALARAILQ NGRFWLLDEP TASLDARSEQ YVMRGLTESI QQRTALFVTH 
QLQPLQSVEQ ILVMENGLLV QAGHFEDLSQ QSGLFATMLA ANQALQAANK GDLDA