Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0800 |
Symbol | |
ID | 5136291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 809332 |
End bp | 810297 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640532258 |
Product | pseudouridine synthase family 1 protein |
Protein accession | YP_001216750 |
Protein GI | 147673214 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 54 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAA AGTTACAAAA AGTTTTAGCA CGTGCTGGTC ATGGTTCTCG TCGTGAGCTT GAAGCTCTGA TCCGAGCTGG GCGTGTAAGT GTTAATGGCA AGGTAGCTGT ACTGGGCGAA CGCCTAGAAG ATGATAACGC TGTCGTGCGC ATCGATGGAC ATGTTGTGTC TGTGAAAGCG CAAGAAGAGG TGATCTGCCG AGTTCTGGCT TATTACAAAC CAGAAGGCGA GCTGTGTACC CGTCATGATC CAGAAGGTCG CCGTACGGTA TTTGACCGTC TGCCGAAAAT TCGTGGTTCA CGCTGGATTT CTGTTGGCCG TTTGGACGCC AACACGTCAG GTTTGCTGCT GTTTACCACC GATGGTGAAC TGGCTAACCG TTTAATGCAC CCAAGCCGTC AGGTAGAACG TGAATATCTG GTTCGCGTCT TTGGTGACGT GACGGAAGAA AAAGTTCGCA ATCTCGTACG TGGTGTGCAG CTAGAAGATG GTATGGCGCG TTTTGAAGAT GTGATGTACG CCGGTGGCGA AGGCATCAAC CATACTTTCT ACGTGGTAAT CAATGAAGGT CGTAACCGTG AAGTGCGTCG TCTGTGGGAA TCACAAGGTA CGACAGTAAG CCGTCTGAAG CGCGTACGTT ACGGTGATAT TTTCCTCGAC AAAAAACTGC CTCGCGGCGG TTGGATGGAG CTTGATCTCA AGCAAGTGAA CTACCTGCGT GAGTTAGTAG AACTGCGTCC AGAGAAAGAA ACGGTGCTGA ACATGGCGCC TGATGCCGCA ACGCGTAAGC GTGAGCGTAC CCGTAGCCAG AAAATTCGTC GTGCAGTACG TCGTCACGAA GAGCGAATTT CAGCTACTCC GGGTCGTAGT GGAAAAGCCC CTGCGTGCCG TAAGCCGGGT GGTGAATCGA GCACGCGCAA TAAAGTGGCT AACCAGCAAC AAAGCTCGCG TAAGCCGCGC GGATAA
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Protein sequence | MSEKLQKVLA RAGHGSRREL EALIRAGRVS VNGKVAVLGE RLEDDNAVVR IDGHVVSVKA QEEVICRVLA YYKPEGELCT RHDPEGRRTV FDRLPKIRGS RWISVGRLDA NTSGLLLFTT DGELANRLMH PSRQVEREYL VRVFGDVTEE KVRNLVRGVQ LEDGMARFED VMYAGGEGIN HTFYVVINEG RNREVRRLWE SQGTTVSRLK RVRYGDIFLD KKLPRGGWME LDLKQVNYLR ELVELRPEKE TVLNMAPDAA TRKRERTRSQ KIRRAVRRHE ERISATPGRS GKAPACRKPG GESSTRNKVA NQQQSSRKPR G
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