| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0712 |
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| Symbol | cspD |
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| ID | 5136192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 736579 |
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| End bp | 736809 |
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| Gene Length | 231 bp |
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| Protein Length | 76 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640532170 |
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| Product | cold shock-like protein CspD |
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| Protein accession | YP_001216662 |
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| Protein GI | 147674134 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 49 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATAGCA TGGCTACAGG TACAGTGAAA TGGTTTAATA ATGCCAAAGG CTTCGGTTTT
ATTTGCCCGG AAGGTGAAGA CGGAGATATT TTCGCTCATT ACTCAACCAT TCAGATGGAC
GGATACCGTA CACTCAAAGC CGGTCAACAG GTTTCTTATC AGGTGGAGCA AGGTCCTAAG
GGATACCACG CGAGCTGTGT TGTGCCAATC GAGGGACAAT CAGCAAAATA G
|
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| Protein sequence | MYSMATGTVK WFNNAKGFGF ICPEGEDGDI FAHYSTIQMD GYRTLKAGQQ VSYQVEQGPK
GYHASCVVPI EGQSAK
|
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