| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0710 |
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| Symbol | |
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| ID | 5135658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 733222 |
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| End bp | 734094 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640532168 |
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| Product | pseudouridine synthase family 1 protein |
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| Protein accession | YP_001216660 |
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| Protein GI | 147674615 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGGTAT TTATAATTAA ACAAATTGAA GACAATAGTC TATTATCTTG TTCGTTAAAC
CTTTTCCAGG GCGCAAATGA TAGCCGATCT CGCCTCTACG GAAAACTTTC AAACACAGTT
TATTTACATT TTTGCAAGGT GCTTAACATG TCATCTCGCT TGTCCAGCGA TGCCACCTCC
TCTTCTTCCG ATCAACGAAA GTCGCATTTT AAACAAAGAG CCGCGAAAAA CGCTGGCCAT
CCACCAACGA GAGCAAATCG AAAGAGTGTT GCTAACAAGA AAAAAAATGC CACTCAAACG
GCTTTGTCAC CTAAGCGCCC CCTTTCTCCT GCTGAGCGTA AAGTGATCCT GTTTAATAAA
CCTTATGACA CTTTAAGCCA ATTTACCGAT GGGGATGGAA GAAAAACCTT GGCCGACTAC
ATCCCAATTA AGGATGTTTA CGCCGCAGGA CGTTTGGATC GCGATAGCGA AGGACTACTG
ATTTTAACCA ATGATGGAAT TTTGCAGGCC AGATTGACTC AGCCGCAGTC CAAAGCGCCA
AAAACTTACT GGGTGCAAGT TGAAGGTTCG CCACAAGAGA GCGACCTTGA GGCATTGCGC
CACGGAGTGA CCTTAAAAGA TGGCCCGACT TTACCGGCGA AAGTCGACAT CATGCCCGAA
CCCACGCTTT GGCCACGCAA TCCGCCGGTG CGTTTTCGCG CAGCAATTCC GACCACATGG
TTAGCCATTA CTTTAATGGA AGGGCGTAAT CGCCAAGTAC GACGCATGAC GGCGCACATC
GGTTTCCCGA CTCTACGCTT GATTCGTTAC TCCATGGGCG ATTGGAACTT GGGAGATTTG
CAGCCCGGTG AGTGGCGGGA AGTGACGCTT TAA
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| Protein sequence | MKVFIIKQIE DNSLLSCSLN LFQGANDSRS RLYGKLSNTV YLHFCKVLNM SSRLSSDATS
SSSDQRKSHF KQRAAKNAGH PPTRANRKSV ANKKKNATQT ALSPKRPLSP AERKVILFNK
PYDTLSQFTD GDGRKTLADY IPIKDVYAAG RLDRDSEGLL ILTNDGILQA RLTQPQSKAP
KTYWVQVEGS PQESDLEALR HGVTLKDGPT LPAKVDIMPE PTLWPRNPPV RFRAAIPTTW
LAITLMEGRN RQVRRMTAHI GFPTLRLIRY SMGDWNLGDL QPGEWREVTL
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