| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0691 |
|---|
| Symbol | |
|---|
| ID | 5135345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 714033 |
|---|
| End bp | 715784 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640532149 |
|---|
| Product | phage tail tape measure family protein |
|---|
| Protein accession | YP_001216641 |
|---|
| Protein GI | 147673746 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3941] Mu-like prophage protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGC AACTTAAAAC AGACATCATC CTCAACCTAG CGGGTAATCT CGCGGCCAAA
GCCAAGCAAT ATGGCGCATC AATGAGCGAC TTCGCACGCA AGAATGAGCG TGCCATGACT
CTACTCAAAA CCTCAGCAGA TGCCGCAGGT CGCGGCATTG ACTCACTCGG TAACCGCTAT
GTTGGCCTTG TTACTGCTGT TGCGACAGGC GCGGCCGTGC GTAATGTGGC GGCGCTCGAA
GCGCAAATGG TGCGCATTGG TACTAACGCC AAGCTCTCTA GTGATCAAGT CGCCCTGCTC
ACCAAGCAGC TTGAAGCGAT GTCAGTGCAA AAGGATATCC GCATTGGTAC TGACCAGTTG
GCCGCAGGCG TGGATGAGCT GCTGGGGAAA ACGGGTGACT TTGAATTCGT GCAAGAGAAC
CTTGAGAACA TGGGTTTGTT CATGCAAGCC TTCGGGGCAG ATGCGCGTTC AACAGGTGCG
CTGTTTGCCC AGTTCCGTGA GAAAGGGATC CGAGATGCCA AAGACGTGAT GAACACCATC
GATGAGCTGT ATGGTCAGTT CGCGATCGGT AGTGTCAACG TCAAAGACTT GGCTGATATT
TCCGAGCAGC TCTTTGCTAC TTACCAAGGC AAAGGGCCAG AAGCGATCTC TCAGATGTCT
GCGCTCGTTC AGCTCTTTGC TAAGGCTAAA GGCAATGCAA ACGAATCGTT GACCTCAATT
CAGGCCGTGT TCGCCACGTT CAGCGATAAA AAGAAAGTGG AGTTCCTGAA CCGTCAGGGC
ATCGAAGTAT TCAAAAAAGG CACCAAAGAG CTGCGCGAGC CTGTCGAACT GCTCTTAGAG
ATTTTGGATA AGGCCAAGAA TGACCCATTG AAATTGGGTG ATGTGTTTGA CCAAACCAGC
TTGCAAGGTT TGGCCTCTCT CTACTCTCAA GAGAATAAAG ATTTGCTGCG ATCCATGATT
AGCGGCACCG CAGAAATGGG GGCGACACAG GAAGCCGCCG CCAAGAACGC TGCGACCCTG
AATGCAGCCA CCACCGCATT GAATAACAGC TTCAATAAAT TTGCCAACGA ACGCTTGGCC
GAGCCGATTC AAGAACTCGC GGACGCGATC AACTCAGTTG ATGATGAAAC CATTCAGAAC
TGGCTCAAGT GGGCAGAAGC AGCTGGCTAT GGTGTGGGTT TGTTGTTAGC AGGTAAGAAA
GCTGTAGATG CTTATCGATG GGTAAAAGGT GGTTCCGGCG GTTCAGGCGG TGCAGCAGGT
GGCGGTTTCG CCGATTTAGG TGTAATGCCC GTGTACGTGG TGAACATGCC AGGTGGTGGC
ATGGGTGGAG CTGCTGGCGG ATTACCAGAA GGTATCGGCG GAGATGGTAA GCCAACAGGT
AAGCCAAGTG CCAAGTCAAA GTGGCCGTCT ATTTTTTCAA AGCAGAATCT CGCGGCCATC
GGCACGATTG GTTATGCCAG CACCATGATC CCAGAGTGGT CTCCTATCGA TGTTCGCCGT
GCATCAGAAG TGGATCGCAC AGGCTTGCCG GAAAGCTTTG TTCCTGCACC TGGATTGCTC
GACGTGTGGG ATGAACTCAA AGGCCTATTC TCTGGCTCAA GTAATGGTTC AATGGCTGGC
AATAGTTACA TGGCAGGCCA AACGGGTGGC GAGATGAAAT TAAAAGTGGA AGTGTCTGAT
GACCGTGTAA AAGTCACGCC TACTTACCTG CCGAAAGGTT TCACTATTGA CCCAGATATG
GGCGCAAATT AA
|
|---|
| Protein sequence | MAQQLKTDII LNLAGNLAAK AKQYGASMSD FARKNERAMT LLKTSADAAG RGIDSLGNRY
VGLVTAVATG AAVRNVAALE AQMVRIGTNA KLSSDQVALL TKQLEAMSVQ KDIRIGTDQL
AAGVDELLGK TGDFEFVQEN LENMGLFMQA FGADARSTGA LFAQFREKGI RDAKDVMNTI
DELYGQFAIG SVNVKDLADI SEQLFATYQG KGPEAISQMS ALVQLFAKAK GNANESLTSI
QAVFATFSDK KKVEFLNRQG IEVFKKGTKE LREPVELLLE ILDKAKNDPL KLGDVFDQTS
LQGLASLYSQ ENKDLLRSMI SGTAEMGATQ EAAAKNAATL NAATTALNNS FNKFANERLA
EPIQELADAI NSVDDETIQN WLKWAEAAGY GVGLLLAGKK AVDAYRWVKG GSGGSGGAAG
GGFADLGVMP VYVVNMPGGG MGGAAGGLPE GIGGDGKPTG KPSAKSKWPS IFSKQNLAAI
GTIGYASTMI PEWSPIDVRR ASEVDRTGLP ESFVPAPGLL DVWDELKGLF SGSSNGSMAG
NSYMAGQTGG EMKLKVEVSD DRVKVTPTYL PKGFTIDPDM GAN
|
|---|
| |