Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0648 |
Symbol | |
ID | 5137153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 689144 |
End bp | 689881 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640532106 |
Product | prophage MuSo2, Cro/CI family transcriptional regulator |
Protein accession | YP_001216598 |
Protein GI | 147673224 |
COG category | [K] Transcription |
COG ID | [COG2932] Predicted transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.19 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGACA CTTACAACAA AAATGCGGCA GGAAAAGACA AAAATGCGGA TCACATTTTT GAAATCAAAG GAATAATGCG ATTCCCCGAA AGGCTAAAGG AAGCTATTGG GGATATTTCA ATTCGCAGCT TTGCGAAGAA ATGTGGACTA TCCGAGGCGG TTGTGCGCAA TTATCTAGGC GGAAAAACAT TCCCATCCTT AGATAAGCTC GCGCTGATAT CAGAAATCAG CAACAAACCA CTTGAATGGC TATGTTCAGG AGCCACAACC GATTATTCAG TTAGTGAGCC ATCTGCCTTT TATAGCATCC CCATGGATGA GTTCGTGATG ATACCTGGCT ATCGAATACA GGTTTCAGCA GGTCACGGCG CGCTTAACCC AGAGAATATG GAGCCGACTC GGTATCTGGC ATTTCGCCGT AAGTGGCTGA ACTATAGAGG GTTCAACGAA AAGGATTTAG CGATCGTGTG GGCAAAGGGC GACAGCATGG AGCCCACGAT CCACAACAAT GACACGCTTG TAGTTCACAT GGCTAGGAAC AAGCCGCAAG ATGGACACAT CTATATTTTC AGGAATGGTG ATGAGCTTTT TGTGAAGCGG TACCAGTCAA TGTTAGGAAC ATGGCGACTG ATAAGCGACA ACCCTATATA TGACAAGCTG GATATTCCAA AGCATGAACA GCACCAGTTT GATGTGGTTG GTCAGGTAGT TCACATCGCC AAAGACATCG GAGATTGA
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Protein sequence | MSDTYNKNAA GKDKNADHIF EIKGIMRFPE RLKEAIGDIS IRSFAKKCGL SEAVVRNYLG GKTFPSLDKL ALISEISNKP LEWLCSGATT DYSVSEPSAF YSIPMDEFVM IPGYRIQVSA GHGALNPENM EPTRYLAFRR KWLNYRGFNE KDLAIVWAKG DSMEPTIHNN DTLVVHMARN KPQDGHIYIF RNGDELFVKR YQSMLGTWRL ISDNPIYDKL DIPKHEQHQF DVVGQVVHIA KDIGD
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