Gene VC0395_A0613 details

Gene Information

• Locus tag: VC0395_A0613
• Symbol: oppF
• ID: 5135536
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 654010
• End bp: 655020
• Gene Length: 1011 bp
• Protein Length: 336 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640532071
• Product: oligopeptide ABC transporter, ATP-binding protein
• Protein accession: YP_001216563
• Protein GI: 147673695
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGGAGGCT TGGACAAAAT GAGCGTAGAG AAAAAATTAT TACTGGACGT TAAAGATCTT 
AAAGTCCATT TCAACATTAC CCCGAAATCG GCATGGCCAT GGACCAAACC CGTTACCTTG 
AAAGCGGTTG ATGGGGTTAA CGTGCGTCTG TATGAAGGCG AAACTTTAGG GGTAGTGGGT 
GAGTCAGGTT GTGGTAAATC GACGTTTGCA CGCGCCATTA TTGGTTTGGT GCAAGCGACT 
CACGGTGAAG TGGTGTGGTT AGGTCAGGAT TTAACACGTA TGCAGGAAGT CAAACGCCGT 
GCAACGCGTA AGCAAATCCA AATGATCTTC CAAGACCCTC TGGCATCGTT AAACCCGAGA 
ATGACGGTCG GTGATATCAT TGCTGAGCCA CTACAAACCT TCTATCCCGA GCTTTCCAAG 
CAAGAAGTGA AAGATCGGGT AAAAGAGATG ATGGCCAAGG TTGGGTTACT GCCTAACGTG 
ATCAACCGTT ATCCGCATGA GTTTTCAGGC GGTCAGTGTC AGCGTATCGG TATTGCTCGC 
GCGCTGATCC TCAAACCTAA GATGATCATC TGTGATGAAC CGGTTTCCGC TCTGGATGTG 
TCGATTCAGG CTCAGGTCGT TAACCTTCTC AAAGAGCTGC AAAAAGAGCT CGGTTTAAGT 
CTGGTGTTCA TCGCGCACGA TCTCTCGGTG GTAAAGCACA TCTCAGATCG CGTGTTGGTC 
ATGTATTTGG GTAATGCGGT AGAGTTAGGC GTCTCTAAAG AACTGTTTGC CAACCCTAAA 
CACCCTTATA CCAAGGCATT AATGTCTGCA GTGCCTATTC CTGACCCCAA CATCGAGCGC 
AATAAGACCA TTCAGATGTT GGAAGGGGAT CTGCCTTCAC CGATGAACCC GCCTTCAGGT 
TGTGTGTTCC GTACTCGTTG CCCGCAAGCC ACGGCAGAGT GTGCGAAGAC GAAACCAGTG 
ATTAAAGGTT CGGATATTCA CTCAGTCTCT TGTTTATACG CTGAGGCATA A 

 

Protein sequence

MGGLDKMSVE KKLLLDVKDL KVHFNITPKS AWPWTKPVTL KAVDGVNVRL YEGETLGVVG 
ESGCGKSTFA RAIIGLVQAT HGEVVWLGQD LTRMQEVKRR ATRKQIQMIF QDPLASLNPR 
MTVGDIIAEP LQTFYPELSK QEVKDRVKEM MAKVGLLPNV INRYPHEFSG GQCQRIGIAR 
ALILKPKMII CDEPVSALDV SIQAQVVNLL KELQKELGLS LVFIAHDLSV VKHISDRVLV 
MYLGNAVELG VSKELFANPK HPYTKALMSA VPIPDPNIER NKTIQMLEGD LPSPMNPPSG 
CVFRTRCPQA TAECAKTKPV IKGSDIHSVS CLYAEA