| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0610 |
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| Symbol | oppB |
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| ID | 5136334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 651196 |
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| End bp | 652116 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640532068 |
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| Product | oligopeptide transporter permease |
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| Protein accession | YP_001216560 |
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| Protein GI | 147675147 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 53 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTTAAAT TCATAGCAAA AAGGATATTT GAAGCAATTC CAACGATGTT GGTGTTGATT
ACTATATCTT TCTTTCTTAT GCGCTACGCG CCAGGTAACC CATTCTCTTC AGAACGCCCT
CTGCCGCCAG AAGTGATGGC CAACATCAAT GCCAAATATG GCCTAGATAA ACCCGTTTCT
GAACAGTATT TAACCTATTT GACCAACATT GTTCAGGGTG ATTTTGGCCC ATCGTTTAAG
TACAAAGACT ATACGGTGAA TGAGCTTATC GCCAGTGCAC TGCCTGTTTC CGTGAAAATT
GGTCTCGCCG CATTTGTGTT TACTGTGATC ATGGGGGTAA CGGTCGGAAC CATTGCCGCC
CTGAAGCAGA ATACGTGGAT AGACTACACC ATCATGTCGA CCGCCATGTT AGGGGTGGTG
ATGCCCTCGT TCGTGTTAGC GCCAGTACTC ATATATATCT TCGCTATCCA GTTTAGTTTA
TTCCCTGCCG GTGGCTGGCA AGACGGTGGG TTTGAGTATA TGGCGTTGCC GGTTTTGGGT
ATGTCACTGC TCTACGTCGC GACATTTGCG CGTATTACTC GTGGTTCGAT GATTGAAACC
TTGAACAGTA ACTTCATTCG TACCGCACGT GCGAAAGGTT TGAGCTATGG CTATATCGTG
GTCAAGCATG CGTTAAAACC TGCACTGCTG CCTGTGGTTT CTTACATGGG ACCCGCTTTC
GTCGGTATTA TCACAGGTTC GGTTGTTATT GAGACCATTT TTGGTTTGCC CGGCATTGGC
AAGCTCTTCG TTAACGCCGC CTTCAACCGA GATTATTCTC TGGTGATGGG GGTAACGATC
CTGATCGGTT TCCTATTTAT TCTGTTTAAC GCGATTGTCG ATATTCTCCT CGCTTACATC
GATCCGAAGA TTCGCTACTA A
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| Protein sequence | MLKFIAKRIF EAIPTMLVLI TISFFLMRYA PGNPFSSERP LPPEVMANIN AKYGLDKPVS
EQYLTYLTNI VQGDFGPSFK YKDYTVNELI ASALPVSVKI GLAAFVFTVI MGVTVGTIAA
LKQNTWIDYT IMSTAMLGVV MPSFVLAPVL IYIFAIQFSL FPAGGWQDGG FEYMALPVLG
MSLLYVATFA RITRGSMIET LNSNFIRTAR AKGLSYGYIV VKHALKPALL PVVSYMGPAF
VGIITGSVVI ETIFGLPGIG KLFVNAAFNR DYSLVMGVTI LIGFLFILFN AIVDILLAYI
DPKIRY
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