Gene VC0395_A0603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0603 
Symbol 
ID5137559 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp640715 
End bp642034 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content45% 
IMG OID640532061 
Productsensory box sensor histidine kinase 
Protein accessionYP_001216553 
Protein GI147673721 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones51 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAGA GTCGTTTATT GCTCTCTGAA CTACTGGATC AACTCTCTTT TGCGCTCTGT 
ATCGTGCGTA ATGACTATGT GATCGTCAAA GTGAATGAAT ATTTTGAATC ACGTGTCATT
TTTGATGGGG AAACCATGCA AGGGAAGAAC ATCCTAGAGC TATTTCCTGA ATCCGCCGAT
TATTTAAAGC GCAAAATTGA TACGGCGCTG GTGATTGAAT CCTCCAGTTT CAGCAGTTGG
GAGCAGAAAC CGCATCTTTT GCCTTTCAAA AGTTCTCGCC CAGTGTCGGG CGAAGAAGAG
CAGATGTATC AAAACCTCGA AGTGATCCCG ATCCACAGTG AAGATGGGAC GATAGAGCAT
GTCTGTCTCT GTGTGTATGA CGTCACGATT CAAGCGAGCC AGCAACAGGA ACTTAAGCGA
GTATCGCAAA AGCTTGAAGA AGAGCATCAA TCCCAAAAAG TGTTAATCAA GAAACTGGAA
GATGCACAAG GGCAATTAAT TCAATCGGAA AAAATGGCCT CAATTGGTCA ACTTTCTGCG
GGGATCGCCC ATGAAATTAA TAACCCAGTA GGCTTTATTA CCTCGAACCT ACAAACGTTA
AGCGACTACT TTAATAGCTT AGAGAAAGTT CTGAAAAGCA TTACCCAGAC GATTGGTCAG
AGTAAAGACA CGGCACTCAA TGAAGCTTGT CAGAAGATCC TTAAACAAGG ACAAGTAGAT
TTTATTTTGG AAGACACGGC GGAGTTGATT ACCGAATCTC TCGAAGGCTC TTCACGCGTC
ATGTCGATTG TAAAAAACCT CAAAGAGTTC TCACACGTTG ACCGTTCAGA GTGGAGTTAC
GCCAATCTAG AAAACTGTAT CGAATCGACG TTGAAAATCA TCAATAACGA GATCAAGTAC
AACATCACGT TGGAGAAACA CTACGCGGCC AATGTGCCCG ATGTTTTTTG CCAGCCGATG
CAGATCAATC AGGTGTTACT CAACATATTG GTGAATGCCA GCCATGCCAT CAAAGGCGAA
GGGACGATCA CCATTACCTT ACAATCTGCG GGGGACGACT TTGTTGAAAT ACACATTCGA
GACACGGGAT GCGGTATTCC GGAGGAGATC CGCGAGCGTA TTTTTGAACC CTTCTTTACC
ACAAAACCTG TCGGTTCGGG GACCGGATTA GGTTTATCTG TCTCCTACGG CATTATCAAT
AAGCACAATG GTACGATCAG CGTCACCAGC GAAGTCGGTA AGGGGAGCGA ATTCACCATT
CGTTTACCGG TGAATCCCAG TGCCGAAGCG GTAGACAATA CCGATGCCAA AGCGATGTAA
 
Protein sequence
MAKSRLLLSE LLDQLSFALC IVRNDYVIVK VNEYFESRVI FDGETMQGKN ILELFPESAD 
YLKRKIDTAL VIESSSFSSW EQKPHLLPFK SSRPVSGEEE QMYQNLEVIP IHSEDGTIEH
VCLCVYDVTI QASQQQELKR VSQKLEEEHQ SQKVLIKKLE DAQGQLIQSE KMASIGQLSA
GIAHEINNPV GFITSNLQTL SDYFNSLEKV LKSITQTIGQ SKDTALNEAC QKILKQGQVD
FILEDTAELI TESLEGSSRV MSIVKNLKEF SHVDRSEWSY ANLENCIEST LKIINNEIKY
NITLEKHYAA NVPDVFCQPM QINQVLLNIL VNASHAIKGE GTITITLQSA GDDFVEIHIR
DTGCGIPEEI RERIFEPFFT TKPVGSGTGL GLSVSYGIIN KHNGTISVTS EVGKGSEFTI
RLPVNPSAEA VDNTDAKAM