| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0585 |
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| Symbol | |
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| ID | 5136546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 623959 |
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| End bp | 626040 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640532043 |
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| Product | hypothetical protein |
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| Protein accession | YP_001216535 |
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| Protein GI | 147673342 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0321937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGGGGTAT TTACGATAAA ATGCGCAGCA AAAAATACAA CATACCATTA TTCAACGTCT
ATGCTACTTA ACGCTTTTTC ACGCCGAGTC TTCCTTTGGC TAGGTTGGCT ATTGATTTCC
ACCAGCAGTT TAGCCGCTAC ATCTACGACG TATAAGGTCG CCACCGAAGC GGATGACGTG
GTGACTCGTG TGCTTTTTGA TTCGATTGCT CACCACTTCA ACCTTGAAAT TGAATACGTC
AACTACCCCA GTTTTAACGA TATTCTGGTG GCGATAGAGA CTGGCAACGC CGATTTTGCT
GCCAACATTA CTTACACTGA TTTGCGTGCT CAACGTTTTG ATTTTTCAAG ACCAACCAAC
ATCGAGTACA CCTATCTCTA CAGTTATGGT GGCCTACGTT TACCCGAGTT GCGCCTCGTG
GGTATCCCGA AAGGAACCAC CTACGGGACC CTACTAAAAG AACACTATCC CTATATCCAG
CAAGTTGAGT ATGAAGGGCA TTTAGAAGCG CTCACTTTGC TGGAAAGTGG CCGAGTAGAC
GGAGTGGTTG ATGCGATCAA TCAGCTCAAA CCTATGCTAC TGAAAGGGCT TGATGTACAA
CTCCTTAACG ACCAATTACC GATTCAGCCT GTTTCTATTG TGACGCCTAA AGGCAAACAC
TCAGCGCTAT TGGGCAAGAT TGAAAAATAC GCGCATTCGG CTCACGTACA ACGTTTATTG
CGTGAATCGA TCCAAAAGTA TCAATTGGAC ATCCGTAAGC AAGCTCTGCG TCAATCCGTG
GTTGAGAGCG GACTCAACGT GCAGCGTGTA TTGCGTGTTA AGCTAGAGAA CAACCCGCAA
TATGCACTTT ATCAGCCAGA CGGTTCGGTT CGTGGGATCA GTGCTGATGT TGTGTTTCAG
GCCTGTGAGA TGCTACTGCT GAAATGCGAA TTGGTCAGTA ATGGTCAAGA AACATGGGAG
AGCATGTTTG ATGATTTACA GGATAAAAGC ATCGATATTT TGGCTCCTAT AACGGTTTCT
CAGCAGCGTA AAAACCTCGC TTACTTCAGT GAAAGCTACT ACCACCCACA AGCGATTTTG
GTCAAACGTG AACACTATAA AGACGATGTG TATAGCAATG TGTCTGAGTT GGTGGCTGAA
CGTATTGGCG TCATCAAAGA CGATTTTTTT GAAGAGCTGT TACAGCAGAT GCTGCCGAAC
AAGATCTTGT TCAGCTACGC AAGTCAGGAA GAGAAAGTTC AAGCCTTACT GAATAAAGAG
GTGGACTACA TAGTGCTCAA TAGAGCCAAT TTTAATCTCT TGCTTCGCGA GTCAACGGAG
ATGTTACCGA TTGTAGAAGA CACCATGATT GGCAGTTTCT ACCAATATGA CATTGCGATA
GGTTTTGCTA AAAATCCACT TGTTGCAACT CTGGCACCTC TTTTCTCTCG GGCAATTAAA
ATGCTCAATA CCGAACAGAT CATACATACC TATGATTATC AGCCAAATTG GCGAGCCACA
TTACTTGCGG AAAAGAAATA TCAGCGCAGT ACTCAATGGC TTTTTGCCAT GGCTTTCATC
GTTTTGTTTA TGGTGGCGTT TTACCTCCAT GGCATATCAC ATACCGATAA CCTTACTAAG
TTGCGCAATC GTCGCGCTTT GTATAACCGA TACCGCCGCG GGTTATCGCC TCGCCTAAGC
TTGGTTTATC TTGACGTGAA TACGTTTAAA TCAATCAACG ATCAGTATGG ACATGAAGTG
GGTGACAAAG TCCTTAAGCA GTTGGCTCAG CGCATCGAAG CGGTATGGCG TGGGCGCAGC
TATCGGATTG GTGGGGATGA ATTTATTTTA ATCGGTGAAT GTTCTGCTAA GCGGCTTGAA
CATGTGGTTG CGCAATGTGA ACGTTTTATG TTTGTGGATG CAGAGCGCGA TGTCAGTTTT
GAAGTGAGTG TGGCGATTGG TATTGCTAAG AATCGTGAGC GGACCGAATC ACTCAATGAG
GTGATGCACC AAGCGGATAT TGCGATGTAT CGCGCTAAGG CGGAATCGAC GCAATCGCCA
TTTCAGGCTG CCAGCAAGGT AAAAGGATTA CACATCGTTT AA
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| Protein sequence | MGVFTIKCAA KNTTYHYSTS MLLNAFSRRV FLWLGWLLIS TSSLAATSTT YKVATEADDV
VTRVLFDSIA HHFNLEIEYV NYPSFNDILV AIETGNADFA ANITYTDLRA QRFDFSRPTN
IEYTYLYSYG GLRLPELRLV GIPKGTTYGT LLKEHYPYIQ QVEYEGHLEA LTLLESGRVD
GVVDAINQLK PMLLKGLDVQ LLNDQLPIQP VSIVTPKGKH SALLGKIEKY AHSAHVQRLL
RESIQKYQLD IRKQALRQSV VESGLNVQRV LRVKLENNPQ YALYQPDGSV RGISADVVFQ
ACEMLLLKCE LVSNGQETWE SMFDDLQDKS IDILAPITVS QQRKNLAYFS ESYYHPQAIL
VKREHYKDDV YSNVSELVAE RIGVIKDDFF EELLQQMLPN KILFSYASQE EKVQALLNKE
VDYIVLNRAN FNLLLRESTE MLPIVEDTMI GSFYQYDIAI GFAKNPLVAT LAPLFSRAIK
MLNTEQIIHT YDYQPNWRAT LLAEKKYQRS TQWLFAMAFI VLFMVAFYLH GISHTDNLTK
LRNRRALYNR YRRGLSPRLS LVYLDVNTFK SINDQYGHEV GDKVLKQLAQ RIEAVWRGRS
YRIGGDEFIL IGECSAKRLE HVVAQCERFM FVDAERDVSF EVSVAIGIAK NRERTESLNE
VMHQADIAMY RAKAESTQSP FQAASKVKGL HIV
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