| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0563 |
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| Symbol | |
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| ID | 5135584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 604526 |
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| End bp | 605092 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640532021 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001216513 |
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| Protein GI | 147674954 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGTGTCGA TATTGAATCT GTTTGGAAAG AAAGTTTCCC AACGTCCGGT CAATAATGAC
ATGGACAGAC AAAGAAAATA CGAAGCACTG GTGCGAGCTT ATCATCGCGA CCTTTACCGA
TACGCCTATT GGTTGTGTAA AGATCGCTCG ATTGCCGAAG ACTTGGTGCA AGAAACCTGC
TTGAGAGCGT GGAAATCGCT CGATAGCCTG CTGGATGAAA AAGCAGCCAA AGCTTGGCTA
ATTACGATTT TGCGCCGAGA AAATGCTCGC CGCTTTGAGC GTAAACAGTT TGACTTAGTC
GATATCGACG ATCACGACTA CGAAGCCAAA TATAGCGATG ATGAGCACCA TCAAAATGAG
TGGCTGCAAA GGCAAATTTT GAAGTTGGAT GTCGAATATC GCGAGCCCCT CTTTCTACAA
GTGGTGGGCG GATTCAGTGG TGAGGAGATC GCAGACATCC TTTCACTGAA TAAAAATACG
GTGATGACCC GTTTGTTTAG AGCACGTAAC CAACTTAAAG AGATGATGGA TGGTTCAGAA
CACTACCCGG AGCAGCAAAA TGGATGA
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| Protein sequence | MVSILNLFGK KVSQRPVNND MDRQRKYEAL VRAYHRDLYR YAYWLCKDRS IAEDLVQETC
LRAWKSLDSL LDEKAAKAWL ITILRRENAR RFERKQFDLV DIDDHDYEAK YSDDEHHQNE
WLQRQILKLD VEYREPLFLQ VVGGFSGEEI ADILSLNKNT VMTRLFRARN QLKEMMDGSE
HYPEQQNG
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