Gene VC0395_A0556 details

Gene Information

• Locus tag: VC0395_A0556
• Symbol: udk
• ID: 5137673
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 596530
• End bp: 597189
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640532014
• Product: uridine kinase
• Protein accession: YP_001216506
• Protein GI: 147674003
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0572] Uridine kinase
• TIGRFAM ID: [TIGR00235] uridine kinase

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.0365333
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCGGGT GCATAACCAT GTCTGAGAAT AATCAATGTG TCATCGTCGG TATTGCTGGC 
GCTTCTGCTT CTGGTAAGAG TCTCATTGCG AGCACGATTT ATAATGAGCT ACGCGCCAAA 
GTGGGTGACC ATCAAATCGG TGTGATTACG GAAGATTGCT ACTACAAAGA TCAGAGCCAT 
CTGAGCATGG AAGAACGTGT TAAAACCAAC TACGACCACC CAAGTGCGCT AGACCACGAT 
CTCCTTTGCC AACATTTGCA AATGTTGGCG CGTGGCGAAG CGGTTGAAGT GCCAGAATAC 
AGCTACACTG AGCACACACG TACCGAGCAA ACCACCACCA TGACGCCGAA GAAAGTGATC 
ATTCTGGAAG GCATCCTGCT TCTGACTGAT CCACGTCTTC GTGATTTGAT GCACGCGACC 
GTATTTATGG ATACGCCGCT GGATATCTGC TTGCTGCGTC GTGTGAAGCG TGATGTACAA 
GAGCGTGGTC GCACCATGGA ATCTGTACTG AAGCAGTACC AAGAGACGGT ACGCCCTATG 
TTTATGCAAT TTATTGAGCC GTCTAAACAG TACGCTGACA TCATTGTGCC GCGTGGTGGT 
AAAAACCGTA TCGCGATTGA TGTTCTCAAA GCGCATATCG CAAAATTGCT CAAATCGTAA 

 

Protein sequence

MFGCITMSEN NQCVIVGIAG ASASGKSLIA STIYNELRAK VGDHQIGVIT EDCYYKDQSH 
LSMEERVKTN YDHPSALDHD LLCQHLQMLA RGEAVEVPEY SYTEHTRTEQ TTTMTPKKVI 
ILEGILLLTD PRLRDLMHAT VFMDTPLDIC LLRRVKRDVQ ERGRTMESVL KQYQETVRPM 
FMQFIEPSKQ YADIIVPRGG KNRIAIDVLK AHIAKLLKS