Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0535 |
Symbol | rnfD |
ID | 5137154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 573097 |
End bp | 574143 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640531993 |
Product | electron transport complex protein RnfD |
Protein accession | YP_001216486 |
Protein GI | 147674988 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00000134913 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCCTTCT TTATTGCTAG CTCCCCACAT TTACGCAGTA AGCGCAGCAC GGCTGACGTT ATGCGTTGGG TATTAGTCTG CGCACTGCCC GGCCTGATCG CTCAGACTTA CTTTTTTGGC TACGGCACAC TGATCCAGTT ACTGCTGGCC ATCTCGGTCG CAGTGGCACT CGAAGCGGGC ATTATGCTGC TGCGTAAACG ATCACCAATC TCAGCACTGC GCGATTACAG CGCGGTGGTT ACCGCATGGT TACTCGCGGT CGCTATCCCG CCCCTCTCAC CATGGTGGGT CGTCGTGATC GGTCTGATTT TTGCGATCGT GATTGCCAAA CATTTGTATG GTGGACTTGG GCAAAACCCT TTTAACCCAG CGATGATCGC CTACGTAGTG TTGTTGATCT CCTTTCCGGT TCAGATGACC AGTTGGATGG CGCCCATCAA ATTAACCGCC GAACCCAGCT CACTGGTAGA CTCGTTCTCA CTGATCTTCG GCGGTTTTGA CAGTGATGGT CTATCGCTAC AGCAAATCCG TACGGGCATC GATGGCATTA CCATGGCAAC CCCGCTCGAT GCGATCAAGA CCTCGCTCAA AGCAGGACAC ACCATGAGTG AAACCTTGAC CCAGCCTCAG TTTAGTGGCT TTGCGGGTAT CGGTTGGGAA TGGGTCAATA TTGCCTATCT ACTCGGTGGC CTGATTCTGC TGAAACTGCG TATTATCCGT TGGCACATTC CAGTGGCAAT GCTGGCAGGT TTGGTTTTCA CAGCGTTACT GGCACAACTT TTTGCACCGG GAACAACCGC GTCCCCCATG ATCCACCTAC TCTCGGGCGC AACCATGCTG GGCGCATTTT TTATCGCGAC CGATCCGGTC AGCGCCAGCA CGACGGATAA AGGCCGCTTG ATTTACGGTT TCTTCATCGG TGCAATGGTG TTTCTGATCC GTAGTTGGGG CGGCTTCCCT GATGGTGTCG CCTTTGCCGT ACTGCTCGCC AACATGTGCG TACCGCTGAT TGACTACTAC ACCAAACCGA GAACTTACGG ACACTAA
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Protein sequence | MAFFIASSPH LRSKRSTADV MRWVLVCALP GLIAQTYFFG YGTLIQLLLA ISVAVALEAG IMLLRKRSPI SALRDYSAVV TAWLLAVAIP PLSPWWVVVI GLIFAIVIAK HLYGGLGQNP FNPAMIAYVV LLISFPVQMT SWMAPIKLTA EPSSLVDSFS LIFGGFDSDG LSLQQIRTGI DGITMATPLD AIKTSLKAGH TMSETLTQPQ FSGFAGIGWE WVNIAYLLGG LILLKLRIIR WHIPVAMLAG LVFTALLAQL FAPGTTASPM IHLLSGATML GAFFIATDPV SASTTDKGRL IYGFFIGAMV FLIRSWGGFP DGVAFAVLLA NMCVPLIDYY TKPRTYGH
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