Gene VC0395_A0492 details

Gene Information

• Locus tag: VC0395_A0492
• Symbol: ligA
• ID: 5137473
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 525975
• End bp: 527984
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640531950
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001216443
• Protein GI: 147675693
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000000242454
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAGATG TCGCGCAACG ATTAACAGAA TTAAGAAAAA CCTTGCATGA GCATGGTGTC 
CGCTATTACG TAGAAGATGC CCCCACCATT CCGGATGCAG AATACGATCG CTTAATGCGC 
GAGCTGCTGG AATTGGAAGC GGCTCACCCG GAATTGATGA GCTCGGACTC GCCCAGTTTA 
CGAGTCGGAG GACGTCCGCT GGATGCTTTT GAATCTGTCG TGCATGAAAT TCCGATGTTA 
TCGCTCGATA ACGCCTTTGA TGATGGTGAA TTAGAAAGCT TTTATCGCCG TATGACGGAT 
CGGATCCAGG CGGTACAGCA TAGTGCCTTT TGTTGTGAGC CGAAACTGGA TGGCTTGGCG 
GTCAGTTTAC TATACGAAAA TGGTGTTCTG ACCCGCGCGG CGACTCGTGG TGATGGTATG 
ACCGGCGAAA ACATCACGGA AAATGTACGT ACCATTAAAG CAATCCCTTT ACGTCTGCAA 
GGCGCAGATT TTCCAACTCG CCTTGAAGTG CGCGGTGAAG TGTTTATGCC TAAAGCGGGG 
TTTGAAGCAC TTAACGCACG AGCATTGAAA AAAGGTGAAA AGCAGTTTGT TAACCCTCGT 
AATGCGGCGG CGGGAAGCCT ACGTCAACTC GACTCCAAAA TTACCGCCCA ACGTCCACTG 
GCTTTTTACG CTTATAGTGT TGGTGTTATT GAAGGCGGAG AGTTAGCGAC CAGCCACTAT 
CAACGATTTT TGCAACTAAA GGGCTGGGGG CTGCCGATTT GTCCTGAAAC CAAACTGGTA 
ACTTCTCTCG CCGAAGTCAA AGCTTTTTAT CAAGACATTT TGCAACGTCG TCAGTTTTTG 
GCTTATGAGA TTGATGGCGT CGTCATTAAA GTTGACGATA TCCAGTTGCA GGAGCGATTG 
GGGTTCGTTG CTAGAGCGCC GCGCTGGGCG ATTGCCTATA AATTTCCTGC GCAGGAAGAG 
CTTACTTTGC TCAATGATGT TGAATTTCAG GTAGGTCGTA CTGGCGCGAT TACCCCAGTT 
GCTAAGTTGG AGCCTGTTTT TGTCGGTGGT GTTACGGTAA GTAATGCCAC ATTACATAAT 
GCCGATGAGA TTGAGCGTTT GGGAGTGATG GTCGGAGATA CGGTGGTGAT CCGCCGTGCT 
GGGGATGTCA TCCCACAAAT CGTCTCTGTG GTATTAGAGC GACGCCCTGA GAATGCAAAA 
TCTATTGTAT TTCCTACTCG TTGCCCAGTT TGTCAATCGG ATGTTGAACG GGTTGAAGGA 
GAAGCGGTTG CTCGATGTTC CGGTGGACTG ATTTGCCAAG CTCAGCGCAA AGAGGCATTG 
AAGCATTTTG TTTCTCGCAA GGCCATGGAT GTAGAAGGCT TGGGCGATAA AGTGATTGAG 
CAACTGGTTG ACCGAGAAAT GGTGAGTACA CCTGCTGATT TATTCCGGTT AAGAGCGGGA 
GAGCTCACGA TTTTGGAGCG AATGGGCCCC AAATCGGCGC AGAATGTGAT TGATGCTCTC 
AATAAAGCGA AGCAAACCAC ATTACCTAAG TTTTTATATG CACTGGGTAT TCGTGAAGTC 
GGCGATGCTA CCGCACTCAA CTTGGCTCAG CACTTTTTAA GTTTGGAAGC GATTCAACAA 
GCGAGTTTAG AACAATTTAT CGAAGTTCCC GATGTCGGAG TGGTTGTTGC AAGCCATTTA 
CTGGCCTTCT TTGCGCAAGA CCGTAACCAA CAAGTGATCA ATGAATTGCT AGAACAAGGC 
ATCACATGGC CGGCGCTAAC GGCTGCGCCC GTGGCGGTAG ACTCTGCTCT AGCGGGCAAA 
ATTGTTGTGT TAACCGGCAG TTTTACTCAA TTGTCTCGTA ATGATGCGAA AGCCGCACTA 
CAAGCTTTAG GTGCTAAGGT GACGGGTAGC GTATCAAAAA ATACTGATAT TGTTTTTGCA 
GGAGAAGCAG CGGGCTCTAA GCTAGCCAAA GCGACCGAGT TGGGTATCCA AGTTTTCGAT 
GAGCAAGCAT TAATCGAATT TTTGAAATAA 

 

Protein sequence

MSDVAQRLTE LRKTLHEHGV RYYVEDAPTI PDAEYDRLMR ELLELEAAHP ELMSSDSPSL 
RVGGRPLDAF ESVVHEIPML SLDNAFDDGE LESFYRRMTD RIQAVQHSAF CCEPKLDGLA 
VSLLYENGVL TRAATRGDGM TGENITENVR TIKAIPLRLQ GADFPTRLEV RGEVFMPKAG 
FEALNARALK KGEKQFVNPR NAAAGSLRQL DSKITAQRPL AFYAYSVGVI EGGELATSHY 
QRFLQLKGWG LPICPETKLV TSLAEVKAFY QDILQRRQFL AYEIDGVVIK VDDIQLQERL 
GFVARAPRWA IAYKFPAQEE LTLLNDVEFQ VGRTGAITPV AKLEPVFVGG VTVSNATLHN 
ADEIERLGVM VGDTVVIRRA GDVIPQIVSV VLERRPENAK SIVFPTRCPV CQSDVERVEG 
EAVARCSGGL ICQAQRKEAL KHFVSRKAMD VEGLGDKVIE QLVDREMVST PADLFRLRAG 
ELTILERMGP KSAQNVIDAL NKAKQTTLPK FLYALGIREV GDATALNLAQ HFLSLEAIQQ 
ASLEQFIEVP DVGVVVASHL LAFFAQDRNQ QVINELLEQG ITWPALTAAP VAVDSALAGK 
IVVLTGSFTQ LSRNDAKAAL QALGAKVTGS VSKNTDIVFA GEAAGSKLAK ATELGIQVFD 
EQALIEFLK