| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0482 |
|---|
| Symbol | |
|---|
| ID | 5137729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 515268 |
|---|
| End bp | 515732 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640531940 |
|---|
| Product | putative metalloprotease |
|---|
| Protein accession | YP_001216433 |
|---|
| Protein GI | 147673894 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0319] Predicted metal-dependent hydrolase |
|---|
| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.000119898 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTG AACTGGATTT GCAATTGGCA GTCGAAAATG AACATGGGCT ACCAAGTGAA
GCGGAGTTTG CGTTGTGGCT CTCTCGAACC ATCACGCCGT TTCAGCCACA AGCTGAGGTG
ACGGTTCGCA TTGTCGATGA AGCAGAAAGC CATGCGCTGA ATTTGAACTA CCGTGGTAAA
GATAAACCGA CCAATGTGCT GTCTTTTCCA TTTGAAGCTC CTCCGGGGAT GGAAATGGAT
CTGCTTGGCG ACTTGGTGAT TTGCCGCCAA GTCGTTGAGC GTGAAGCAAT TGAGCAAAAT
AAGCCTTTGC AAGCACATTG GGCGCATATG GTTGTACATG GCAGCCTGCA TCTGCTAGGT
TATGACCACA TCGAGGATGA TGAAGCCGAA GAGATGGAAT CTCTCGAAAC CGAAATTATG
CAAGAGATGG GTTTTACCGA CCCATATCTG GCAGAAAAAG AGTAA
|
|---|
| Protein sequence | MSIELDLQLA VENEHGLPSE AEFALWLSRT ITPFQPQAEV TVRIVDEAES HALNLNYRGK
DKPTNVLSFP FEAPPGMEMD LLGDLVICRQ VVEREAIEQN KPLQAHWAHM VVHGSLHLLG
YDHIEDDEAE EMESLETEIM QEMGFTDPYL AEKE
|
|---|
| |