| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0476 |
|---|
| Symbol | holA |
|---|
| ID | 5135165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 507708 |
|---|
| End bp | 508736 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640531934 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001216427 |
|---|
| Protein GI | 147673713 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.159232 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATTT ACGCTGAAAA ACTGGCTGAA TCACTGCACA AAACGCTCTA TCCGATTTAC
CTCGTATTCG GTAATGAGCC ACTGCTGCTC CAAGAAGCCA AAACCGCCAT CGAAAAAACG
GCACAAGCGC AAGGTTTTTT GGAAAAACAC CGATTTAGCG CGGATGCCGG GCTCGATTGG
AACGCGGTGT ATGACTGTTG CCAAGCTCTG AGTCTGTTTT CATCTCGCCA ACTTATCGAA
ATTGAGATCC CAGAATCTGG GGTCAATGCT CAAACGGCAA AGGAACTTAG CGCACTGGTA
GGCCAACTTC ACCAAGACAT TCTCTTGCTG GTGATTGGCC CCAAACTGAC TAAGGCGCAA
GAGAACGCAG CTTGGCTCAA AACGCTTGCG CAGCAAGCCT GTTGGGTTAA CTGCCTCACG
CCAGAATTGA GCCGTTTACC TCAGTTTGTT CAGCAGCGCT GTTTTGCCCT CGGTTTAAAA
CCGGATGCCG AAGCGGTACA AATGTTGGCG CAGTGGCATG AAGGTAATCT CTTTGCATTA
GCCCAGAGTC TCGAAAAATT AGCGTTACTC TACCCCGATG GTCTACTGAC TTTAGTGCGC
TTGGAAGAGT CGCTGAGCCG CCATAACCAT TTCACGCCTT ATCACTGGAT GGATGCGCTA
TTAGAAGGCA AAGCCAACCG AGCTCAGCGT ATTTTGCGCC AGCTTATGCT CGAAGAGAGT
GAGCCGATTA TTCTGATCCG CACCGCGCAA AAAGAGCTCA CTCAACTGCT TAAATGGCAA
CAAGAGCGCC AACAGCTGGG TAATTTGGGG AGTCTTTTTG ATCGCTATCG TGTCTGGCAG
AATCGAAGAC CACTCTACTC TGCCGCTTTA CAGCGCTTAC CGAGTCGCGC CCTACTTCGG
TTGGTTGGAA TATTAACTCA GGCTGAATTA CTGGCAAAAA CGCAATACGA ACAGCCAGTA
TGGCCAATCT TGCAGCAACT AAGCCTTGAA TGCTGCAATC CTCAGGCAAA CCTACCTTTG
CCTCACTAA
|
|---|
| Protein sequence | MRIYAEKLAE SLHKTLYPIY LVFGNEPLLL QEAKTAIEKT AQAQGFLEKH RFSADAGLDW
NAVYDCCQAL SLFSSRQLIE IEIPESGVNA QTAKELSALV GQLHQDILLL VIGPKLTKAQ
ENAAWLKTLA QQACWVNCLT PELSRLPQFV QQRCFALGLK PDAEAVQMLA QWHEGNLFAL
AQSLEKLALL YPDGLLTLVR LEESLSRHNH FTPYHWMDAL LEGKANRAQR ILRQLMLEES
EPIILIRTAQ KELTQLLKWQ QERQQLGNLG SLFDRYRVWQ NRRPLYSAAL QRLPSRALLR
LVGILTQAEL LAKTQYEQPV WPILQQLSLE CCNPQANLPL PH
|
|---|
| |