Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0465 |
Symbol | glyA |
ID | 5135152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 497534 |
End bp | 498841 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640531923 |
Product | serine hydroxymethyltransferase |
Protein accession | YP_001216416 |
Protein GI | 147674000 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.804501 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAGTCAT TGTGTGGTTT TTTTGCAATT TCAGTCAATC TGAGTCAGGA GATACAGATG CTTAAGCGTG ATATGAACAT CGCTGATTAC GATCCGGAGC TATACGCTGC CATTCAGGAA GAGACGCTTC GTCAAGAAGA ACATATTGAA CTTATTGCTT CAGAAAACTA CACCAGCCCG CGTGTAATGC AAGCACAAGG TTCTCAACTG ACCAACAAGT ACGCCGAAGG TTATCCAGGT AAGCGTTACT ATGGTGGTTG TGAGTACGTG GACAAAGCAG AAGCTTTAGC GATTGATCGT GCTTGCCAAC TGTTTGGCTG TGAATACGCG AACGTTCAGC CGCACTCTGG ATCTCAAGCG AACAGCGCTG TGTACATGGC GCTGCTCAAC CCAAGTGACA CCGTGCTAGG TATGAGCCTT GCTCACGGTG GTCATTTGAC TCACGGTTCA CCGGTTAACT TCTCGGGCAA GCACTACAAT GTGATCCCTT ACGGTATCGA TGAAGCGGGT CAAATTAACT ACGATGAAAT GGAAGCCTTA GCACTGGAGC ATAAGCCAAA GATGATCATC GGTGGCTTCT CGGCTTACTC ACAAATCGTG GATTGGAAAC GCATGCGTGA AATTGCCGAT AAAGTGGGTG CTTACCTGTT TGTTGACATG GCGCACGTTG CGGGTCTGAT TGCGGCGGGT GTTTACCCAA GCCCAGTGCC TTTTGCACAC GTTGTCACGA CCACCACGCA TAAAACACTG GCAGGTCCAC GCGGTGGCTT GATCTTGTCA AATGCCGGTG AGGAGATGTA CAAGAAGCTG AACTCTGCAG TATTCCCTGG CGGCCAAGGC GGTCCTTTGA TGCACGTGAT TGCGGCAAAA GCGGTGGCGT TCAAAGAAGC GATGGAGCCT GAGTTTAAAG AGTATCAAGC GCGTGTGGTG AAAAACGCCA AAGCCATGGT GGCGCAGTTC CAAGAGCGTG GTTACAAGAT CGTCTCTAAC AGCACGGAAA ACCATTTGTT CCTTGTTGAT CTGATTGATA AAAACATCAC AGGTAAAGAA GCAGATGCCG CTCTGGGCGC TGCCAATATC ACGGTTAACA AGAACTCGGT ACCAAATGAC CCACGCAGCC CGTTTGTGAC TTCAGGTATC CGTGTCGGTA CACCTGCAAT CACTCGCCGT GGTTTTACTG AGCAAGACGC AAAAGATCTC GCCAACTGGA TGTGTGATGT TCTAGACAAC ATCAATGATC AAGGTGTGAT TGAAGCGACG AAACAAAAAG TATTGGCGAT CTGTCAACGT CTGCCTGTTT ACGCTTAA
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Protein sequence | MESLCGFFAI SVNLSQEIQM LKRDMNIADY DPELYAAIQE ETLRQEEHIE LIASENYTSP RVMQAQGSQL TNKYAEGYPG KRYYGGCEYV DKAEALAIDR ACQLFGCEYA NVQPHSGSQA NSAVYMALLN PSDTVLGMSL AHGGHLTHGS PVNFSGKHYN VIPYGIDEAG QINYDEMEAL ALEHKPKMII GGFSAYSQIV DWKRMREIAD KVGAYLFVDM AHVAGLIAAG VYPSPVPFAH VVTTTTHKTL AGPRGGLILS NAGEEMYKKL NSAVFPGGQG GPLMHVIAAK AVAFKEAMEP EFKEYQARVV KNAKAMVAQF QERGYKIVSN STENHLFLVD LIDKNITGKE ADAALGAANI TVNKNSVPND PRSPFVTSGI RVGTPAITRR GFTEQDAKDL ANWMCDVLDN INDQGVIEAT KQKVLAICQR LPVYA
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