Gene VC0395_A0465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0465 
SymbolglyA 
ID5135152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp497534 
End bp498841 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content49% 
IMG OID640531923 
Productserine hydroxymethyltransferase 
Protein accessionYP_001216416 
Protein GI147674000 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0112] Glycine/serine hydroxymethyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.804501 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGTCAT TGTGTGGTTT TTTTGCAATT TCAGTCAATC TGAGTCAGGA GATACAGATG 
CTTAAGCGTG ATATGAACAT CGCTGATTAC GATCCGGAGC TATACGCTGC CATTCAGGAA
GAGACGCTTC GTCAAGAAGA ACATATTGAA CTTATTGCTT CAGAAAACTA CACCAGCCCG
CGTGTAATGC AAGCACAAGG TTCTCAACTG ACCAACAAGT ACGCCGAAGG TTATCCAGGT
AAGCGTTACT ATGGTGGTTG TGAGTACGTG GACAAAGCAG AAGCTTTAGC GATTGATCGT
GCTTGCCAAC TGTTTGGCTG TGAATACGCG AACGTTCAGC CGCACTCTGG ATCTCAAGCG
AACAGCGCTG TGTACATGGC GCTGCTCAAC CCAAGTGACA CCGTGCTAGG TATGAGCCTT
GCTCACGGTG GTCATTTGAC TCACGGTTCA CCGGTTAACT TCTCGGGCAA GCACTACAAT
GTGATCCCTT ACGGTATCGA TGAAGCGGGT CAAATTAACT ACGATGAAAT GGAAGCCTTA
GCACTGGAGC ATAAGCCAAA GATGATCATC GGTGGCTTCT CGGCTTACTC ACAAATCGTG
GATTGGAAAC GCATGCGTGA AATTGCCGAT AAAGTGGGTG CTTACCTGTT TGTTGACATG
GCGCACGTTG CGGGTCTGAT TGCGGCGGGT GTTTACCCAA GCCCAGTGCC TTTTGCACAC
GTTGTCACGA CCACCACGCA TAAAACACTG GCAGGTCCAC GCGGTGGCTT GATCTTGTCA
AATGCCGGTG AGGAGATGTA CAAGAAGCTG AACTCTGCAG TATTCCCTGG CGGCCAAGGC
GGTCCTTTGA TGCACGTGAT TGCGGCAAAA GCGGTGGCGT TCAAAGAAGC GATGGAGCCT
GAGTTTAAAG AGTATCAAGC GCGTGTGGTG AAAAACGCCA AAGCCATGGT GGCGCAGTTC
CAAGAGCGTG GTTACAAGAT CGTCTCTAAC AGCACGGAAA ACCATTTGTT CCTTGTTGAT
CTGATTGATA AAAACATCAC AGGTAAAGAA GCAGATGCCG CTCTGGGCGC TGCCAATATC
ACGGTTAACA AGAACTCGGT ACCAAATGAC CCACGCAGCC CGTTTGTGAC TTCAGGTATC
CGTGTCGGTA CACCTGCAAT CACTCGCCGT GGTTTTACTG AGCAAGACGC AAAAGATCTC
GCCAACTGGA TGTGTGATGT TCTAGACAAC ATCAATGATC AAGGTGTGAT TGAAGCGACG
AAACAAAAAG TATTGGCGAT CTGTCAACGT CTGCCTGTTT ACGCTTAA
 
Protein sequence
MESLCGFFAI SVNLSQEIQM LKRDMNIADY DPELYAAIQE ETLRQEEHIE LIASENYTSP 
RVMQAQGSQL TNKYAEGYPG KRYYGGCEYV DKAEALAIDR ACQLFGCEYA NVQPHSGSQA
NSAVYMALLN PSDTVLGMSL AHGGHLTHGS PVNFSGKHYN VIPYGIDEAG QINYDEMEAL
ALEHKPKMII GGFSAYSQIV DWKRMREIAD KVGAYLFVDM AHVAGLIAAG VYPSPVPFAH
VVTTTTHKTL AGPRGGLILS NAGEEMYKKL NSAVFPGGQG GPLMHVIAAK AVAFKEAMEP
EFKEYQARVV KNAKAMVAQF QERGYKIVSN STENHLFLVD LIDKNITGKE ADAALGAANI
TVNKNSVPND PRSPFVTSGI RVGTPAITRR GFTEQDAKDL ANWMCDVLDN INDQGVIEAT
KQKVLAICQR LPVYA