| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0439 |
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| Symbol | |
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| ID | 5135423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 465849 |
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| End bp | 468959 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640531897 |
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| Product | putative multidrug resistance protein |
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| Protein accession | YP_001216390 |
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| Protein GI | 147674044 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium)
[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00223634 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGTTGT CAGATGTATC GGTAAAGCGC CCTGTCGCAG CGTTAGTACT GAGTATGTTG
CTGTGCGTGT TTGGTGTGGT CTCTTTCACT AAACTTGCAG TACGTGAAAT GCCGGATATT
GAAAGCCCTG TGGTATCGGT TTCCACCCGT TATCAAGGCG CTTCGGCCAC CATTATTGAA
AGTCAGATCA CCAGCGTGCT AGAGGATCAA TTAGCGGGCA TCAGTGGGAT TGATGAGATT
ACCTCAGTTA GCCGCAACGG AATGTCTCGT ATCACGGTGA CCTTCGAGCT TGGTTATGAT
CTCAATACCG GTGTGAGTGA CATTCGTGAT GCGGTGGCTC GGGCGCAGCG TTCACTGCCT
GAAGAAGCGG ACGATCCGCA GGTGTTCAAG AATAATGGCT CTGGTCAGGC GTCGGTCTAT
ATCAATCTCA GCTCCTCAGA AATGGATCGC ACTCAGTTGA CCGATTACAT CGAGCGGGTG
TTGCTCGATC GGTTTAGCTT GATCTCCGGT GTGAGTTCGG TGGATGTCTC TGGCGGCCTC
TATAAAGTGA TGTATGTACG CATCAAGCCA GAACTGATGG CGGGGCGCGG CGTTGCGACC
AGCGATATTT CTGATGCACT CAACAAAGAG AACCTCGAAA GTCCCGGAGG TCAGGTTCGC
AACGATTCGA CCGTGATGTC GGTGCGTACC GCGCGCGGTT ATCAATCTGC TGAAGATTTT
GAGTATCTGG TGGTGAAACG TGCCAGTGAT GGTACCCCCA TCTACCTCAA AGATGTCGCG
GATGTGTTTA TTGGGGCGGA AAACGAAAAC TCGACCTTTA AAAGTGATGG CATCGTCAAC
GTGAGCATGG GGATTGTGCC GCAATCCGAC GCGAACCCGC TGGAAGTGGC GAAGCGCGTG
CATGAAGAAG TGGATAAGGT TCAGCAGTTT TTACCCAAGG GTACCCGTTT AGCCATTGAC
TATGACTCAA CGGTGTTTAT TGAGCGCTCA ATAAGCGAGG TGTATAGCAC ACTCTTTATC
ACGGGTGGCT TAGTGATTTT GGTGTTGTAC ATTTTTATCG GCCAGTTGCG AGCCACCTTA
ATTCCTGCGG TAACGGTTCC GGTTTCGCTG ATCTCGGCCT TTATGGCTGC GTACTACTTC
GGATTTTCTA TTAACCTCAT CACCTTAATG GCGCTGATCT TATCGATTGG TCTGGTGGTC
GATGATGCCA TCGTGGTCGT TGAAAATATT TTTCACCACA TTGAACGGGG CGAAAAACCT
CTTTTAGCCG CCTACAAAGG TACACGAGAA GTTGGCTTTG CCGTGATAGC CACGACTTTG
GTACTGGTGA TGGTGTTTCT GCCGATCTCG TTTATGGACG GGATGGTCGG ACTCCTGTTT
ACTGAATTCT CCGTACTACT GGCGATGGCA GTGATTTTCT CTTCTCTGAT CGCGTTAACG
CTGACGCCAG TGCTTGGCAG TAAGCTTTTA AAAGCCAATG TAAAACCGGG ACGCTTTAAT
CAGTTGATTG ATAGGCTGTT CGCACGACTG GAATCGGGCT ATCGCCAAGT GGTAAGCCGA
GCCATTCGTT GGCGTTGGGC GGCGCCGGTT GTGATTGCGG CTTGTATTGG TGGTAGTTAT
GGTTTGATGC AACTGGTGCC AGCTCAGCTA ACCCCTTCCG AAGATCGCGG TGTGATTTTC
TCTTTTGTGC GTGGTGCTGA TGCCACCAGT TATAACCGCA TGGCGGCTAA TATGGATTTG
GTTGAGCAGC GGTTGATGCC CTTATTGGGT CAAGGCTTTT TGAAATCGTT TAGTATTCAA
TCACCTGCTT TTGGTGGTAA CGCCGGTGAC CAAACCGGTT TCGTGATCAT GATCCTTGAG
GATTGGAATG ATCGCACCGT TACTGCTCAG GAAGCATTAA GCCAAGTACG TAAAGCCTTA
GCGGGCATTC CTGATGTGCG GGTATTCCCA TTCATGCCCG GTTTTCGTGG GGGCTCTAAT
GAGCCTGTAC AGTTTGTGCT TGGTGGCTCG GATTATAGCG AGCTCAAAAC GTGGGCTGAG
AAGTTAGAAG AGGAAGCGGA GAAGTCACCG TTTATGACGG GGGCTGATAT CGATTACTCA
GAAAAAACGC CAGAGTTGGT GGTGACGATT GATAAGCAGC GCGCGGCGGA ATTAGGAATC
AGCGTAAAAT CGATCTCCGA TACACTAGAG GTGATGCTGG GTGGCAAAAA AGTGACGACC
TTCGTTGAGC GTGGTGAAGA GTATGATGTG TATCTGCGTG GGGATGAAAA CAGCTTCAAC
AATGCGGCGG ATTTAAGCCA AATCTATATG CGAACCGCAA CCGGTGAACT GGTGACACTG
GATACGGTGA CGCGTATTGA TGAAGTGGCG TCAGCGATTC GTTTGGCGCA CTACAATAAA
CAGAAATCCG TTACCATTAC CGCAAACCTA GAAGCTGGGT ACACGTTAGG GCAAGCGCTC
GATTTTCTTG ACCAAAAAGC GCAAGAGATA CTGCCAAATG ATATCTCCGT TAGCTACTCG
GGGGAGTCGA AAGATTTCAA AGAGAACCAA TCAAGCGTAG CCATTGTGTT TGCTCTGGCG
CTGCTGGTTG CTTATTTGGT GCTGGCTGCT CAGTTTGAAA GCTTTATCAA CCCGCTGGTG
GTAATGCTGA CGGTACCTAT GGGAGTATTT GGCGGTTTCC TTGGGCTGTT TGTTATGGGA
CAAGGGATGA ACATTTACAG CCAGATTAGC ATGATCATGC TGATTGGTAT GGTCACCAAA
AATGGCATTT TGATTGTCGA ATTTGCTAAC CAACTGCGTG ATCGCGGTGT TGAGTTTGAA
AAGGCGATCA TTGATGCATC GGCGCGCCGT TTGCGTCCAA TCCTGATGAC GGCTTTTACG
ACACTGGCTG GCTCTATTCC TTTGATCGTC TCAACAGGTG CAGGCTATGA GAGCCGAATT
GCGGTCGGTA CGGTGATTTT CTTTGGGATG GGGTTTGCAA CCTTAGTGAC CTTGTTGGTG
ATTCCTGCCA TGTATCGCTT GATTTCCGGT TCAACCCAAG CCCCCGGTCA TGTTGAAGCA
GAGCTCAACC ATGAGCTGCA ACAAGATGTG AAAGGCCGCG CTCAACACTA A
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| Protein sequence | MWLSDVSVKR PVAALVLSML LCVFGVVSFT KLAVREMPDI ESPVVSVSTR YQGASATIIE
SQITSVLEDQ LAGISGIDEI TSVSRNGMSR ITVTFELGYD LNTGVSDIRD AVARAQRSLP
EEADDPQVFK NNGSGQASVY INLSSSEMDR TQLTDYIERV LLDRFSLISG VSSVDVSGGL
YKVMYVRIKP ELMAGRGVAT SDISDALNKE NLESPGGQVR NDSTVMSVRT ARGYQSAEDF
EYLVVKRASD GTPIYLKDVA DVFIGAENEN STFKSDGIVN VSMGIVPQSD ANPLEVAKRV
HEEVDKVQQF LPKGTRLAID YDSTVFIERS ISEVYSTLFI TGGLVILVLY IFIGQLRATL
IPAVTVPVSL ISAFMAAYYF GFSINLITLM ALILSIGLVV DDAIVVVENI FHHIERGEKP
LLAAYKGTRE VGFAVIATTL VLVMVFLPIS FMDGMVGLLF TEFSVLLAMA VIFSSLIALT
LTPVLGSKLL KANVKPGRFN QLIDRLFARL ESGYRQVVSR AIRWRWAAPV VIAACIGGSY
GLMQLVPAQL TPSEDRGVIF SFVRGADATS YNRMAANMDL VEQRLMPLLG QGFLKSFSIQ
SPAFGGNAGD QTGFVIMILE DWNDRTVTAQ EALSQVRKAL AGIPDVRVFP FMPGFRGGSN
EPVQFVLGGS DYSELKTWAE KLEEEAEKSP FMTGADIDYS EKTPELVVTI DKQRAAELGI
SVKSISDTLE VMLGGKKVTT FVERGEEYDV YLRGDENSFN NAADLSQIYM RTATGELVTL
DTVTRIDEVA SAIRLAHYNK QKSVTITANL EAGYTLGQAL DFLDQKAQEI LPNDISVSYS
GESKDFKENQ SSVAIVFALA LLVAYLVLAA QFESFINPLV VMLTVPMGVF GGFLGLFVMG
QGMNIYSQIS MIMLIGMVTK NGILIVEFAN QLRDRGVEFE KAIIDASARR LRPILMTAFT
TLAGSIPLIV STGAGYESRI AVGTVIFFGM GFATLVTLLV IPAMYRLISG STQAPGHVEA
ELNHELQQDV KGRAQH
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