| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0431 |
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| Symbol | treR |
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| ID | 5137235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 459343 |
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| End bp | 460293 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640531889 |
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| Product | trehalose repressor |
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| Protein accession | YP_001216386 |
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| Protein GI | 147673437 |
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| COG category | [K] Transcription |
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| COG ID | [COG1609] Transcriptional regulators |
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| TIGRFAM ID | [TIGR02405] trehalose operon repressor, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.628925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGAA AACTGACTAT TTTAGACATT GCTAGACTCT CAGGCGTCGG TAAATCTACC
GTTTCGCGCG TGTTAACCAA TGATCCTAAA GTGAAGCCTG AAACCCGCGC TAAAGTAGAG
CAGGTGATTG CAGAGTCGGG GTATGTGCCC TCTAAATCGG CACAAACCAT GCGTGGTGGT
AGTCAGAAAG TCGTGGGCAT CATTATTTCA CGTCTGGATT CCCCTTCTGA AAACAAAGCA
GTCAGTACTA TGCTGCAAGC TTTCTATGCT CACGGCTACG ATGTGGTGAT CATGGAAAGC
CAATTTAGCC GCGAAAAAAC CAATGCTCAC TTAAAAGTGC TCGCCAAGCG GCAAGTGGAT
GGCGTCATTG TGTTTGGCTT TACCGATATC GATCATGATG CCTTGCTCAG TTGGCAGCAC
CGCTGTGTAC TCTTGGCCAT GCACAGTGAT GAGATTTCCT CTATCAATTA TGACAATGCT
GGGGTGATTG AGCGTGCGCT GCAGCATTTG GCACAAAAAC AGTTACGCGA TATTGCCTTC
ATTGGGGTCG ACCCACGTGA CAAAACCACG GGTGAGCAGC GGCTCAACGC CTATCTCAAT
TGGTGTGTTG AGCATGAGAT TGTGGCGAAT TACCAAACCG GACAACTGCA TCATGAAAGT
GCTTATCTGC TGGTAGATAA AGTGCTGACT GAGCAAACCC AAGCGATTGT GTGCGCGAGT
GATACTTTGG CGCTCGGTGT GATTAAGCGT TTGCAAGAGC TGCAGCGAGA TGACGTAGTG
GTGACGGGGG TGGGTGGTAA TGAGTTGCTC TCTTTCCTGT TTCCGAACAT ATTCAGTGTC
GATCCTGGTT ATCGTGAGGC CGGAAAACTG GCGGCAGATC TGCTGATTGA GCAGCTATGC
GGCTCTGACC ATGGCTGTGT GCATTTGACC CAAATGCCAG TGTCACGCTA A
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| Protein sequence | MNRKLTILDI ARLSGVGKST VSRVLTNDPK VKPETRAKVE QVIAESGYVP SKSAQTMRGG
SQKVVGIIIS RLDSPSENKA VSTMLQAFYA HGYDVVIMES QFSREKTNAH LKVLAKRQVD
GVIVFGFTDI DHDALLSWQH RCVLLAMHSD EISSINYDNA GVIERALQHL AQKQLRDIAF
IGVDPRDKTT GEQRLNAYLN WCVEHEIVAN YQTGQLHHES AYLLVDKVLT EQTQAIVCAS
DTLALGVIKR LQELQRDDVV VTGVGGNELL SFLFPNIFSV DPGYREAGKL AADLLIEQLC
GSDHGCVHLT QMPVSR
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