| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0422 |
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| Symbol | |
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| ID | 5136520 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 449582 |
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| End bp | 451156 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640531880 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001216377 |
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| Protein GI | 147675023 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.305739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTGTACA TGGGCGTTCT AGAACAAGAT ATCCAAGCAG AGCTTCAAAA ACTGAAATCT
CAGTTAGAAC AAGTACGTTT GACACAAAGG GATACTTCGT TCAAATTTAA CCGAGAGCAG
CAAGTTCTTA AACGAATGGT CACTTCCTTG GCTACGACTT GCCGCGGCAG TAGCTCTCGA
CTAAACCAAA GTTTAGAAGA ACTCTGTTTT GCATTAGAAC AACAAAAAGA CATCAGTACG
CTGATCCCGA AATTAGCCGT ACTGGAACGC ATGTTGAAAC AACAGTCATT GGCCATGGAC
AAACAAACGA GTCATCTGGA TAGCCAGCTA CAGCACAGTG GTGAAACGCT ACTGCGCGTC
CCCGGCTTAC CCGCCAAGAT CAAACGCGAT CTTCGAGATC TGCTGAGTTT TAGCGCCGCA
CAGCCGCTGG AAAAAACTCA GCAAGCTTTG CGTTTGCTGG AAATTTATGA ACGCGCGGTC
AAAATTCAAT GTGCCAATCC CAATTTGGCG CTCAATGAGC TTACTCAACA AGCGGATCGA
GAACTGCTGC ATCGACTTGC CGTTGATTTA CAACACTTGA TTACTGAGTT GGATTTCAAT
GGTGAATCGG GTGATCAACT GACCGATATC CGAACCAAGC TTCTGCTTGG CGTCAATACT
CATACCCTGC TTGAGCTCAC CCTTGAAGTG CTGCGTTTAG TCGTCGATGG AAGCCATGCT
GAGCGCAAAG CAGCCGAAGC CTTTCTCGAG CAAGTGAATC TCTCGATTGG CAATAACCTA
AAAAGCGCGA CTCAAAATCT TGAGCAAAGC CAGAGTTACA TGGCACACCG CCAAGAGATG
AATGGCGAGC TGAGCAGTTT AGTGGCTCGT AGCCAGACCG CGCTCAAAGA ACAGACGGAG
CTAGAACAGC TCAAGCTGAA AATGGCGCCT TTACTGCGCG AGATGTCTTC ACTTTCTGAA
CGCTTACTCT TAGCGGAGCA ACGTGAGCAA GCCCTACTTG AGCGTATGCG CTATAGCAAA
GATCAGATGG AAGCCCTGTC TGATTTGGCA CAAGATTATC GTCGCCGCCT TGAAGATCAA
GCATTGCGCG CGCAACTCGA TCCTCTGACC AAAGTGTACA ACCGCAGTAG CTTTACTGAG
CGACTTGAAC ATGAGTATCG CCGCTGGATC CGTACGCAAC ACAATTTGCG GGTAGTGCTG
TTTGATATTG ATAAATTCAA ATCGATCAAC GACAGCTTTG GCTATACCGC AGGCGATAAG
GCCTTAAGTA TCATTGCTCG CACCATCAAA AAAGAATTAC GAGACAGTGA CACCGTGGCT
CGCTTCTCTG GTGAAGAGTT CATTCTGTTA CTGCCTGAAC GCTCCGATAA TGAGAGTTAC
CAGATTATTC ACCAGATCCA GCTCAACGTG TCGAAACTAC CGTTCAAGTT CCGCGATAAG
AGCCTAACCA TCACGCTGTC TGCGGCGAGT ATCCGCTTCA TGGATTCAGA TACCCCCGAA
ACGGTTCTTG ATCGTTTAAA TCTGACGCTA AGTGAAGCCA AACATATCGG TCCAAGTCAG
TTAGCTTGGA AATAA
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| Protein sequence | MLYMGVLEQD IQAELQKLKS QLEQVRLTQR DTSFKFNREQ QVLKRMVTSL ATTCRGSSSR
LNQSLEELCF ALEQQKDIST LIPKLAVLER MLKQQSLAMD KQTSHLDSQL QHSGETLLRV
PGLPAKIKRD LRDLLSFSAA QPLEKTQQAL RLLEIYERAV KIQCANPNLA LNELTQQADR
ELLHRLAVDL QHLITELDFN GESGDQLTDI RTKLLLGVNT HTLLELTLEV LRLVVDGSHA
ERKAAEAFLE QVNLSIGNNL KSATQNLEQS QSYMAHRQEM NGELSSLVAR SQTALKEQTE
LEQLKLKMAP LLREMSSLSE RLLLAEQREQ ALLERMRYSK DQMEALSDLA QDYRRRLEDQ
ALRAQLDPLT KVYNRSSFTE RLEHEYRRWI RTQHNLRVVL FDIDKFKSIN DSFGYTAGDK
ALSIIARTIK KELRDSDTVA RFSGEEFILL LPERSDNESY QIIHQIQLNV SKLPFKFRDK
SLTITLSAAS IRFMDSDTPE TVLDRLNLTL SEAKHIGPSQ LAWK
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