| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0413 |
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| Symbol | ispA |
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| ID | 5135816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 440163 |
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| End bp | 441047 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640531871 |
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| Product | geranyltranstransferase |
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| Protein accession | YP_001216368 |
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| Protein GI | 147674651 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.058519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGAGG CGTTATCCTC ATACCAACAG CGAAATAACC AGCAACTGGA TCAGTGGCTG
AACCGTATTC CCTTTCAAAC CTTGCCTTTA ATCGAGGCGA TGCGTTACGG GCTACTGCTC
GGCGGCAAAC GGGCACGGCC ATATTTGGTG TACATCACGG GGCAAATGCT CGGCTGTGAG
CTTAGCGACT TAGACACTCC TGCCTCAGCC GTGGAGTGTA TTCACGCCTA TTCGCTGATC
CATGATGATT TGCCCGCCAT GGATGATGAT GAGCTGCGCC GCGGCAAGCC CACTTGCCAT
ATCCAGTTTG ATGAGGCCAC CGCCATTTTG ACCGGCGACG CCCTGCAAAC CTTGGCGTTT
ACTATTTTGG CGGAAGGCGA TCTTTCTGCT GCAGGCGAAA CACAGCGCGT CGCCATGATC
CAAGCTCTTG CCGAAGCTTC TGGCGCACAA GGCATGTGCC TTGGTCAAGC GTTAGATCTG
GCGGCGGAAA ATCGCTTAAT TTCGCTAGAG GAATTGGAAA CCATTCATCG CAATAAAACC
GGCGCTTTAA TGCGCTGCGC GATCCGTTTA GGTGCTTTAG CCGCAGGTGA AAAAGGCCGC
GCCATGCTAC CGCATCTTGA TCGCTATGCA GAAGCGGTTG GCCTCGCGTT TCAGGTTCAA
GATGACATTC TCGATATCAT TAGCGATACC GAAACCCTTG GTAAACCACA GGGTTCTGAC
CAAGAATTAA ATAAAAGTAC CTACCCTGCT CTTTTAGGCT TAGAAGGAGC ACAACAAAAA
GCACACACTC TGTTACAAGA AGCGCTTCTG GCTTTAGAAG CAATTCCCTA CAATACGGAG
CATCTGGAAG AGTTCGCCCG ATATGTCGTC GAGCGCAAGA ACTAA
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| Protein sequence | MIEALSSYQQ RNNQQLDQWL NRIPFQTLPL IEAMRYGLLL GGKRARPYLV YITGQMLGCE
LSDLDTPASA VECIHAYSLI HDDLPAMDDD ELRRGKPTCH IQFDEATAIL TGDALQTLAF
TILAEGDLSA AGETQRVAMI QALAEASGAQ GMCLGQALDL AAENRLISLE ELETIHRNKT
GALMRCAIRL GALAAGEKGR AMLPHLDRYA EAVGLAFQVQ DDILDIISDT ETLGKPQGSD
QELNKSTYPA LLGLEGAQQK AHTLLQEALL ALEAIPYNTE HLEEFARYVV ERKN
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