Gene VC0395_A0412 details

Gene Information

• Locus tag: VC0395_A0412
• Symbol: dxs
• ID: 5136254
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 438263
• End bp: 440143
• Gene Length: 1881 bp
• Protein Length: 626 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640531870
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001216367
• Protein GI: 147675127
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTCTTG ATATCTCAAA ATACCCAACA CTGGCTCTGG CGAATACGCC AGACGAACTG 
CGCAGCCTTC CAAAAGAAGT ACTGCCTAAG CTGTGTGACG AGTTACGTAC CTATTTGCTC 
AACTCGGTGA GCCAATCCAG CGGTCATTTG GCCTCAGGAT TAGGCACCGT TGAGCTGACG 
GTTGCGCTGC ATTACGTCTA CCACACCCCA TTTGATCATC TGATCTGGGA TGTGGGTCAT 
CAGGCTTACC CACATAAAAT TTTGACTGGT CGTCGTGATC AGATGCCCAC CATTCGCCAG 
AAAGATGGAT TACACCCTTT CCCATGGCGT GAAGAGAGTG AATACGACAC CCTCTCGGTG 
GGTCACTCCT CCACCTCGAT CAGTGCCGCA CTCGGCATGG CAATCTGTGC TGGTAAAGAA 
GGTAAAGACC GTAAAGTGGT CAGTGTGATT GGCGATGGCG CGATCACCGC CGGTATGGCG 
TTTGAAGCGA TGAACCACGC GGGGGATGTG CACCCTGATA TGCTGGTCGT ACTCAATGAC 
AATGAAATGT CGATTTCAGA GAATGTCGGC GCACTGAACA ACCATTTGGC GCAAGTGCTG 
TCTGGCAGTC TCTACACCTC TATTCGCGAA GGTGGCAAGA AAGTGCTGTC TGGCATTCCG 
CCAATCAAAG AGCTGGTTCG TCGCACCGAA GAGCATCTCA AAGGCATGGT GGTTCCCGGA 
ACGCTATTTG AAGAGCTCGG CTTTAACTAC ATTGGCCCTG TGGATGGCCA TGACGTACTG 
GAACTGATCA AAACCCTGAA AAACATGCGT GAGCTAAAAG GGCCACAGTT CCTCCACGTG 
ATGACCAAAA AAGGCAAAGG CTATGCGCCT GCGGAAAAAG ATCCGATTGG CTATCACGGC 
GTGCCTAAGT TTGATCCAAG CCACCACAGC TTGCCCAAAA GCAGCAATAC TAAGCCCACC 
TTTTCGAAAA TCTTTGGCGA TTTTCTGTGT GATATGGCGG CGCAAGATCC CAAGTTGATG 
GCGATTACCC CAGCCATGCG TGAAGGCTCT GGCATGGTAC GTTTCTCCAA AGAGTACCCA 
AGCCAATACT TTGATGTGGC GATTGCCGAA CAGCACGCAG TCACGCTGGC GACCGGTATG 
GCTATTGCGG GGTATCACCC GATTGTGGCG ATTTACTCCA CCTTCTTACA GCGTGGTTAC 
GATCAACTGA TCCACGATGT GGCGATCATG AACTTGCCGG TGATGTTTGC CATCGACCGC 
GCGGGGATTG TCGGAGCCGA TGGTCAAACT CACCAAGGTG CGTTTGATTT AAGCTACATG 
CGCTGCATTC CCAACATGCT GATCATGGCT CCGGCGGATG AAAATGAATG TCGCCAAATG 
CTCTACACGG GTCATCAACA TCAAGGGCCA AGTGCCGTGC GTTACCCACG CGGTAATGGC 
ATGGGCGTTG AGCTAGAGAG CAGCTTTACC GCGTTGGAAA TCGGCAAAGG CCGCTTAATG 
CGTGAAAGCA CGGCATGCGA AGGTGAGAAA GTCGCGATTT TGAGTTTCGG TACTCTGCTG 
CCTAACGCTT TACAAGCCGC TGAAAAACTC AACGCGACAG TGGCTGACAT GCGCTTTGTT 
AAACCACTGG ATGAAGCCCT CATCAAGCAA CTCGCCCAAA CTCATGATGT CCTCGTGACA 
TTGGAAGAAA ATGCGATTGC CGGTGGCGCA GGGGCTGGCG TGATTGAGTT TCTGATGAAA 
GAGAAGCAGC TCAAGCCGGT TCTCAATCTC GGCCTACCAG ATCAGTTCAT CGTGCAAGGC 
ACGCAAGAAG AGATGCATGC AGAACTTGGA CTTGATGGTG CAGGCATTGA GCGAGCAATT 
CGCGACTATC TGGCCAAATA G 

 

Protein sequence

MTLDISKYPT LALANTPDEL RSLPKEVLPK LCDELRTYLL NSVSQSSGHL ASGLGTVELT 
VALHYVYHTP FDHLIWDVGH QAYPHKILTG RRDQMPTIRQ KDGLHPFPWR EESEYDTLSV 
GHSSTSISAA LGMAICAGKE GKDRKVVSVI GDGAITAGMA FEAMNHAGDV HPDMLVVLND 
NEMSISENVG ALNNHLAQVL SGSLYTSIRE GGKKVLSGIP PIKELVRRTE EHLKGMVVPG 
TLFEELGFNY IGPVDGHDVL ELIKTLKNMR ELKGPQFLHV MTKKGKGYAP AEKDPIGYHG 
VPKFDPSHHS LPKSSNTKPT FSKIFGDFLC DMAAQDPKLM AITPAMREGS GMVRFSKEYP 
SQYFDVAIAE QHAVTLATGM AIAGYHPIVA IYSTFLQRGY DQLIHDVAIM NLPVMFAIDR 
AGIVGADGQT HQGAFDLSYM RCIPNMLIMA PADENECRQM LYTGHQHQGP SAVRYPRGNG 
MGVELESSFT ALEIGKGRLM RESTACEGEK VAILSFGTLL PNALQAAEKL NATVADMRFV 
KPLDEALIKQ LAQTHDVLVT LEENAIAGGA GAGVIEFLMK EKQLKPVLNL GLPDQFIVQG 
TQEEMHAELG LDGAGIERAI RDYLAK