| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0392 |
|---|
| Symbol | |
|---|
| ID | 5135697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 420687 |
|---|
| End bp | 422279 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640531850 |
|---|
| Product | putative transglycosylase |
|---|
| Protein accession | YP_001216347 |
|---|
| Protein GI | 147674227 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCTT TTGCCTATAA ACTCCCCATT CGCGCACTCT GGCTAGGCTT ATTAAGCCTG
CTCTTAGTCG GTTGCCAAAT CGATTCCGAG CCCAAAAGCG AGCTAGAAAA AATTCGTGAA
CGTGGTGTTT TACGCGTTGG TACGCTCAAC AATCCCCTCT CCTACTACAT CGGCCCTGAT
GGCCCAACGG GATTGGATTA CGAGTTAGCC CGCGAATTTG CCAAAGAGCT TGGCGTAAAG
CTGGAAATGA AGCCAGCATA CCGCCTATCT AGCCTGTTTC CTGCCTTAAA AAACGGTGAA
GTGGACATCA TTGCCGCAGG CTTAAGCCAA TCCGAAGAGC GACTCAAAGA TTTTCGCGCA
GGTCCTGCTT ATTATTACGT TTCGCAGCAA GTGGTCTATA AAAAAGGTGA CTGGCGACCA
CGCAGCTTCA AACAGTTGGT CGAACGCCAG CAAACCTTAT TAAAGGACAA TCCTGAGCTC
GCCTTTTTCA GCGTGGTGGA TGACTCCCAT TTTGAGCACA CCTTGCTAGC CAAACAGCAG
AAATACCCCG ATTTTCAATT TCATGTCGAC AGCAATTCCG ATGTGAATGA CTTACTGAAA
AAAGTCTCAC AAGGAGAGTT ACTGTTTACG ATGGCCGACT CTGTTGAGGT GTCGCTTTCT
CAACGCATCT ATCCTGAACT GGCGGCGGCA TTTGAATTAA CCGAAGATCA GCCGATCTCA
TGGTTTATCC GCCGTTCCGA CGATGAAAGT CTGTATGCCT TAATGATTGA ATTCTTTGGC
AATCTCAAGC AATCGGGCTA TTTGGCGTCT TTGGAAGAAA AATACATCGG CCATATTGGT
GCCTTTGATT ATGTCGATAC CCGCGCCTTT ATTCGCGCGC TGGATACACG ATTACCTCGA
TGGACGCCTC TCTTTCAAAA GTACTCGGCA GAGTTTGATT GGCGTTTAGT CGCCGCACTT
GCGTATCAGG AGTCGCACTG GAATCCGTAT GCCAAATCGC CCACGGGTGT CCGTGGTTTG
ATGATGTTGA CACTACCAAC CGCGCGCAGT GTAGGGGTAA GCGATCGCCT CGATCCAGAA
CAGTCGATTC GTGGTGGGGT GGAATACTTG CGACGTATGA TGGAGCGTGT CCCTGACTCG
ATTTCCGAAC ATGAAAAAAT TTGGTTTGCC TTAGCCTCTT ACAACATTGG CTACGGGCAT
ATGATGGATG CGCGACGCTT AACCAAAAGC CAAGGCGCAG ATCCTGACTC ATGGGCGGAT
GTCAAAGATC GCCTACCACA GCTACAGCAG AAAAAATATT TCACCCAGAC CCGCTATGGC
TATGCGCGTG GCGACGAAGC ACGTAATTAT GTGGAAAATA TTCGCCGTTA CTATCAAAGC
ATCATCGGCC ATCTTGAGCA GCGTCAATTG GCGACAGGCG ATGAAAGTAT TGAAGATCTC
ACCGTGATTG CGCTTGATGA AGAATTTTTC AATGAAGAAG CAAACCGTGA AATCTTGGAT
GAAGAAGCGG AAGCACTCGA ATCAGAGTCA CTCGAAAACA GTGAATCGAG CGCCGAGCCA
TCTGCCAAAC CATCCACTGA GAGCAAAAAT TAG
|
|---|
| Protein sequence | MTPFAYKLPI RALWLGLLSL LLVGCQIDSE PKSELEKIRE RGVLRVGTLN NPLSYYIGPD
GPTGLDYELA REFAKELGVK LEMKPAYRLS SLFPALKNGE VDIIAAGLSQ SEERLKDFRA
GPAYYYVSQQ VVYKKGDWRP RSFKQLVERQ QTLLKDNPEL AFFSVVDDSH FEHTLLAKQQ
KYPDFQFHVD SNSDVNDLLK KVSQGELLFT MADSVEVSLS QRIYPELAAA FELTEDQPIS
WFIRRSDDES LYALMIEFFG NLKQSGYLAS LEEKYIGHIG AFDYVDTRAF IRALDTRLPR
WTPLFQKYSA EFDWRLVAAL AYQESHWNPY AKSPTGVRGL MMLTLPTARS VGVSDRLDPE
QSIRGGVEYL RRMMERVPDS ISEHEKIWFA LASYNIGYGH MMDARRLTKS QGADPDSWAD
VKDRLPQLQQ KKYFTQTRYG YARGDEARNY VENIRRYYQS IIGHLEQRQL ATGDESIEDL
TVIALDEEFF NEEANREILD EEAEALESES LENSESSAEP SAKPSTESKN
|
|---|
| |