Gene VC0395_A0386 details

Gene Information

• Locus tag: VC0395_A0386
• ID: 5135087
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 415488
• End bp: 416090
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640531844
• Product: hypothetical protein
• Protein accession: YP_001216341
• Protein GI: 147674851
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4795] Type II secretory pathway, component PulJ
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 45
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGCAAA ATATGGCTTT GAAAAGTGCT AACCAGCAAG GTAATACGCT GATTGAATTT 
ATGGTTGCCG CTTTGGTGGG GGCGATGGCT TTAGCTATTG TCGGGACTGT CTTTTTGTCT 
AACCAAAAAG CGGCAGCGCA ACGCAGTAAA GAAATTATGC TGCTTCAGCA AGTCAGCAGC 
GTTATGCAGC AGATGAAAGA GGATATCCAG CGTGCTGGTT TTGACGATGT GGGTAACCAA 
TCTATGCGGC TATCTGGTGC TGTCGGTGTG ATCTATCGAG CATCGAATAA AATTGGTTAT 
GTTTATCGAA AATCATCCAC CAAGGTGAGC AATACGACCT ATCAATTAAA TAATGATATG 
TTGGAGTATT GTCAAAAGGA TTCAGCTTCT CCACTCAGTG TTGTCTCTGC TGCGACAGGA 
TGTTTTGATT TATTTGACCC GAAACAAATC AAAATTGATC AATTTGAAAT ATCAGAAACG 
CCTTTATCTG GTCAAGCGGT CAATAGTTCA TTGATGACGA TTTCTATTAT GGCGAAGTTA 
AAAGATGACC CTAATATCTC TAATGCTATC TCATTACAGG TTCAGCAAAG GAATTGGCAA 
TAA 

 

Protein sequence

MRQNMALKSA NQQGNTLIEF MVAALVGAMA LAIVGTVFLS NQKAAAQRSK EIMLLQQVSS 
VMQQMKEDIQ RAGFDDVGNQ SMRLSGAVGV IYRASNKIGY VYRKSSTKVS NTTYQLNNDM 
LEYCQKDSAS PLSVVSAATG CFDLFDPKQI KIDQFEISET PLSGQAVNSS LMTISIMAKL 
KDDPNISNAI SLQVQQRNWQ