Gene VC0395_A0374 details

Gene Information

• Locus tag: VC0395_A0374
• Symbol: smpB
• ID: 5137141
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 405467
• End bp: 405952
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640531832
• Product: SsrA-binding protein
• Protein accession: YP_001216329
• Protein GI: 147675473
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAAA AGAAAACCAA TACCAAAGCG GGTAGCAACA CTATCGCGCT GAACAAAAAA 
GCTCGCCACG AATACTTCAT CGAAGATGAA TTTGAAGCCG GCATGGAGCT ACAAGGCTGG 
GAAGTCAAAT CACTTCGCCA AGGTAAAGCC AACATTGCAG AAAGCTACGT CTACATCAAA 
GATGGCGAAG CGTTCATTTC CGGTATGACC ATCATTCCGT TGCAGCAAGC CTCCACTCAC 
GTGGTAGCCA ACCCTACCCG TATCCGCAAG CTGCTACTTT CACGCCGCGA GCTGGACAAC 
CTGTTTGGCC GCATCAACCG TGAAGGGATG ACACTAACCG CATTGTCACT CTACTGGTCT 
CGTTCGTGGG TCAAAATCAA AATTGGCGTT GCGAAAGGTA AGAAACTGCA CGACAAACGT 
GAAGATCTGA AAGAAAAAGA GTGGCAACGC CAAAAAGATC GAGTGATGAA GAGCGCGTTG 
CGCTAA 

 

Protein sequence

MTKKKTNTKA GSNTIALNKK ARHEYFIEDE FEAGMELQGW EVKSLRQGKA NIAESYVYIK 
DGEAFISGMT IIPLQQASTH VVANPTRIRK LLLSRRELDN LFGRINREGM TLTALSLYWS 
RSWVKIKIGV AKGKKLHDKR EDLKEKEWQR QKDRVMKSAL R