Gene VC0395_A0363 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0363 
SymboltcpN/toxT 
ID5136424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp390636 
End bp391466 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content28% 
IMG OID640531821 
ProductTCP pilus virulence regulatory protein 
Protein accessionYP_001216319 
Protein GI147673596 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.93807 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGGGA AAAAATCTTT TCAAACTAAT GTATATAGAA TGAGTAAATT TGATACTTAC 
ATATTCAATA ACTTATATAT AAACGACTAC AAAATGTTCT GGATAGATAG TGGAATTGCA
AAGCTTATAG ATAAAAATTG CTTGGTTAGT TATGAGATAA ATTCAAGTTC AATTATCTTA
CTCAAGAAAA ACTCTATTCA GCGATTTTCT TTGACTTCAT TATCAGATGA AAATATAAAT
GTTTCTGTAA TTACAATAAG TGATTCATTT ATACGTTCAC TAAAATCTTA CATTCTTGGT
GATCTCATGA TAAGGAATTT ATATAGTGAA AATAAAGATC TATTACTTTG GAATTGTGAA
CATAATGATA TAGCTGTCCT TTCTGAAGTG GTAAATGGTT TCAGAGAAAT TAATTATTCA
GATGAGTTCC TAAAAGTTTT TTTTTCAGGG TTCTTCTCGA AAGTAGAAAA AAAATATAAC
TCTATATTTA TTACTGATGA TCTTGATGCT ATGGAGAAAA TTTCATGTTT AGTAAAAAGT
GATATTACGC GTAATTGGCG TTGGGCAGAT ATTTGTGGTG AATTAAGAAC GAATCGGATG
ATTTTGAAAA AAGAACTAGA GTCTCGAGGA GTAAAGTTTA GAGAATTAAT TAATAGCATT
CGAATATCAT ATTCAATTTC ACTAATGAAA ACCGGTGAAT TCAAAATAAA ACAGATTGCA
TATCAGTCTG GGTTTGCTAG CGTTTCATAT TTTTCTACAG TATTTAAGTC AACCATGAAT
GTAGCACCAA GTGAATATTT ATTTATGTTG ACAGGAGTTG CAGAAAAATA A
 
Protein sequence
MIGKKSFQTN VYRMSKFDTY IFNNLYINDY KMFWIDSGIA KLIDKNCLVS YEINSSSIIL 
LKKNSIQRFS LTSLSDENIN VSVITISDSF IRSLKSYILG DLMIRNLYSE NKDLLLWNCE
HNDIAVLSEV VNGFREINYS DEFLKVFFSG FFSKVEKKYN SIFITDDLDA MEKISCLVKS
DITRNWRWAD ICGELRTNRM ILKKELESRG VKFRELINSI RISYSISLMK TGEFKIKQIA
YQSGFASVSY FSTVFKSTMN VAPSEYLFML TGVAEK