Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0363 |
Symbol | tcpN/toxT |
ID | 5136424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 390636 |
End bp | 391466 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 640531821 |
Product | TCP pilus virulence regulatory protein |
Protein accession | YP_001216319 |
Protein GI | 147673596 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.93807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGGGA AAAAATCTTT TCAAACTAAT GTATATAGAA TGAGTAAATT TGATACTTAC ATATTCAATA ACTTATATAT AAACGACTAC AAAATGTTCT GGATAGATAG TGGAATTGCA AAGCTTATAG ATAAAAATTG CTTGGTTAGT TATGAGATAA ATTCAAGTTC AATTATCTTA CTCAAGAAAA ACTCTATTCA GCGATTTTCT TTGACTTCAT TATCAGATGA AAATATAAAT GTTTCTGTAA TTACAATAAG TGATTCATTT ATACGTTCAC TAAAATCTTA CATTCTTGGT GATCTCATGA TAAGGAATTT ATATAGTGAA AATAAAGATC TATTACTTTG GAATTGTGAA CATAATGATA TAGCTGTCCT TTCTGAAGTG GTAAATGGTT TCAGAGAAAT TAATTATTCA GATGAGTTCC TAAAAGTTTT TTTTTCAGGG TTCTTCTCGA AAGTAGAAAA AAAATATAAC TCTATATTTA TTACTGATGA TCTTGATGCT ATGGAGAAAA TTTCATGTTT AGTAAAAAGT GATATTACGC GTAATTGGCG TTGGGCAGAT ATTTGTGGTG AATTAAGAAC GAATCGGATG ATTTTGAAAA AAGAACTAGA GTCTCGAGGA GTAAAGTTTA GAGAATTAAT TAATAGCATT CGAATATCAT ATTCAATTTC ACTAATGAAA ACCGGTGAAT TCAAAATAAA ACAGATTGCA TATCAGTCTG GGTTTGCTAG CGTTTCATAT TTTTCTACAG TATTTAAGTC AACCATGAAT GTAGCACCAA GTGAATATTT ATTTATGTTG ACAGGAGTTG CAGAAAAATA A
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Protein sequence | MIGKKSFQTN VYRMSKFDTY IFNNLYINDY KMFWIDSGIA KLIDKNCLVS YEINSSSIIL LKKNSIQRFS LTSLSDENIN VSVITISDSF IRSLKSYILG DLMIRNLYSE NKDLLLWNCE HNDIAVLSEV VNGFREINYS DEFLKVFFSG FFSKVEKKYN SIFITDDLDA MEKISCLVKS DITRNWRWAD ICGELRTNRM ILKKELESRG VKFRELINSI RISYSISLMK TGEFKIKQIA YQSGFASVSY FSTVFKSTMN VAPSEYLFML TGVAEK
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