| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0360 |
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| Symbol | tcpT |
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| ID | 5135974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 386895 |
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| End bp | 388406 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640531818 |
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| Product | toxin co-regulated pilus biosynthesis protein T |
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| Protein accession | YP_001216316 |
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| Protein GI | 147673300 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.547799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAATTG ATATAAAGTA TTTAAGTCGT ATTGATATAG ATCGTGAGGA GTTTTTCTTT
AAAGACTCGA GATTAATGTG TAAGAAATTC GATGAAGAGC GTGAGGTATT AACTCTTCTC
GAATTCGATA CAAAATTTCG GGTCAATCTT CTGAAGAAAG ATAAAGTTTA TAAGTATTTC
TTAGTTTCAG ATGCAAATCA TAAATTATTA ATAGCGAATC TTGTTACCGA GCAGCAAGCT
AAAGACTTAA GTTTTATAGA AAAAGATATA ATGAAAATTG CATCATCTGC TACAGCTTAT
GGTGCAAGTG ACATCCACTT CATCCGAGAG GATAGGATTT GTAAAATAAA ATTCCGTGTG
AATGGCACAA TGATCGACTA TAGAGAAATA TTAAGTTCAG AAGCCGATTC GCTAATGTTT
GTTCTATACA ATGTGATGGC AACAACGAAA GAAACGACGT GGAACCGAAA ACTACCTCAA
GATGCAAATA TTATTCTTGT GATCAACGAA AAGGCATATC GCTTTCGTTA CGCACATATG
CCTTTATTTG GTGAGGGAGG GAAAAACTAT CATGCGGTAG TTCGTATTAT CTATCCTTCA
AATAATTTTG TTTGTACAAA CTATCAAGAT ATTGGGTATA ACGAGGCTGA TACCGATGCG
ATTGCAAGAA TTCTAAATAC ATCTTATGGA TTGTTCATTG TTTCCGGAAC AACAGGTTCT
GGTAAATCAA CATCTTTGAA AAAGTATATA GAATTACTTT TCTTTAATAA ATATAAGGGA
AAAGGATGTT TTGTCACCGT TGAAGATCCT GTCGAGTATT TAATTTCTGG AGCACAGCAA
AGCTCAATTG TTGCCGATAA TGATGATAAA ACAAAGAACC CATTTGCTGA TGCGGTACGT
TCAGCGATGC GTCGAGATCC GGACGTTATT ATGATCGGTG AAATTCGTGA TAAACCTACC
GTTGAGGCTC TATCAAGTGC TGTAGAAAGT GGCCACTATT GTCTTACGAC CATCCATGCA
GGTTCTGTTG TTTCTGTTTT ACAAAGACTT TCAGGATTAG GGATGAAGGC TGACAAAATA
GCATCACCTG GATTTCTGGC TGGTATTACA AGTCAGAAAT TAATTCCCGA ACTTTGCCCA
AGTTGTAAAG TTTCCTTTGT TGATGAACGT TATCAGCGTG CTGTATTTAG CGCGAATGAA
AATGGCTGTG AGGCATGTAA TCATTCTGGG TTTAAAGGAA GGCTGCTTTT ATTAGAAACA
TTAGTCCCAA CAGTTGAAGA TTTAGAGCTA GTGGCGAGTG AAAACTGGGT TTCCCTTTAT
CGTAAATATC GGGAGCGACG CTTTATAAAA ACTGGAAAAA AAGGTCTTGG TGAAGGCTTC
AGCATTAAAG ATAAAGCTTA TTACAATGTT TTAAAAGGTA AAGTGTGTCA CGAATATTTT
ATGCTGCATT TCGGTCAGTT AGATCATGAG GATGAAAATA TAATATATGA AAATTATCTC
CAAGAAGTAT AG
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| Protein sequence | MSIDIKYLSR IDIDREEFFF KDSRLMCKKF DEEREVLTLL EFDTKFRVNL LKKDKVYKYF
LVSDANHKLL IANLVTEQQA KDLSFIEKDI MKIASSATAY GASDIHFIRE DRICKIKFRV
NGTMIDYREI LSSEADSLMF VLYNVMATTK ETTWNRKLPQ DANIILVINE KAYRFRYAHM
PLFGEGGKNY HAVVRIIYPS NNFVCTNYQD IGYNEADTDA IARILNTSYG LFIVSGTTGS
GKSTSLKKYI ELLFFNKYKG KGCFVTVEDP VEYLISGAQQ SSIVADNDDK TKNPFADAVR
SAMRRDPDVI MIGEIRDKPT VEALSSAVES GHYCLTTIHA GSVVSVLQRL SGLGMKADKI
ASPGFLAGIT SQKLIPELCP SCKVSFVDER YQRAVFSANE NGCEACNHSG FKGRLLLLET
LVPTVEDLEL VASENWVSLY RKYRERRFIK TGKKGLGEGF SIKDKAYYNV LKGKVCHEYF
MLHFGQLDHE DENIIYENYL QEV
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