| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0356 |
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| Symbol | tcpC |
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| ID | 5135729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 383690 |
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| End bp | 385159 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 640531814 |
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| Product | toxin co-regulated pilus biosynthesis outer membrane protein C |
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| Protein accession | YP_001216312 |
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| Protein GI | 147675545 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.903554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CAATAATCAG TACACTTGTT ATCGGTTTGG TTGCCGGTTG TTCTAATACG
AACTTGCTAA AAGACAATCT GGCTAGCGAG CAAAATGTCA TCAACTTAAG TAAGTCTTCA
AACGAAGCGA AATCTAGAAA TATTGAATTT CTCTCTGGTG CCTATTTAAG TGAGAGAAAA
GTGCCGAAGC ATGACATTAA GTTCAGTGGT AAGTATGTTG AGTTTGAAAG TAAATCACCG
ATTGAGTTAA TCGATGTTCT TGATGGACTT TCTAAGCAAT ATAATATTCA GTATGTATTC
TCAGATGAGT TAGAAGATGA AAAGTCGGAA GAGAATAAAA AGTCATCAGG CTCATCATCG
GCGAAGAAAA TAAAATACTC AGGACCTCTG GCTGGTTTTT TTGATTATTT AAGTAGTGCA
TATAACATGC ACTTTGAATT TGGTCATAAT AACTTAGTTA AGGCATATCA TTATAAAAAT
CAAGTTTTTA ACCTCCAGCA ATACTTTGAT GATAATAAAT TTAGCTCGTC AATGCAGATT
GGGGGTACCA GTGGCACATC AAGTGGTCTA AAAGGTACTG CAGATACCGC TATAGAATCT
AATAGTTGGA AAAAAATCGA TGAGTTTTTA AGTGCATCCT TAGGTGAAAC TGGAAAATTT
ACAATTTTTG AAGATTATTC ACTAGTTACA GTAAAAGCCC GACCTGATAA GTTTTTATTG
TTACATACTT TCTTTGACAA GTTGATCAAT GAGAGCAAGA TGCAAATCGC GGTTGATTAT
AGAGTGGTTT CTCTTAGTGA AGAACGCTTA AATCAGTTAG CTGCCAAATT TGGTATTGAA
AATGCAGGGA AATACAGTAT TACCAGTGAT ATGGTCGATG CGATCTCTTT AAGTCAAGTA
GGGGGGGGAT TAGGCGCTTC ATATCGCTCT GCCTCAGCAA GATTAGATGC AGTGGTTAAT
GAGTTATCAC AGGAAGTAAT GCATGAGGGG CATTTTATCG GTATCCCTAA CAGAGTAATG
CCACTAAATG TCACTACAAA CTCGAAGTAT ATATCCTCAA TCGAAACAAC AAAAGATACC
AATACTGATG AGGAAACGAG AACTGTCAAA GTTTCTGACT TAGTAACAGG TTTTAGCATG
ATGGTTATGC CGAAAATCTT AGATGATGGA CGAATTCAAA TATCGTCTGG CTTTTCAAGA
AAACAGTTAG TGTCTATTGG TACTGCACAA GGTATTACTC TACCAACAGT TGATGAAAAT
GAATCAATGA ATACCGTAAC GATGAATCCT GGTGAAGTAC GCCTAGCAAT GCTATTTAAG
GATAATTACA TTCAGAATAG TAATGGTGTT CAATTATTAG GTGGTGGTAC TGAAAATAAG
AAATCGGCTC GTTATATTGC TGTGCTTGTT GGTGCAAGCA GTTACAAAAC CAATGATCTT
GCTAGTAATA GAGTAAATAT ATATGACTAG
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| Protein sequence | MKKTIISTLV IGLVAGCSNT NLLKDNLASE QNVINLSKSS NEAKSRNIEF LSGAYLSERK
VPKHDIKFSG KYVEFESKSP IELIDVLDGL SKQYNIQYVF SDELEDEKSE ENKKSSGSSS
AKKIKYSGPL AGFFDYLSSA YNMHFEFGHN NLVKAYHYKN QVFNLQQYFD DNKFSSSMQI
GGTSGTSSGL KGTADTAIES NSWKKIDEFL SASLGETGKF TIFEDYSLVT VKARPDKFLL
LHTFFDKLIN ESKMQIAVDY RVVSLSEERL NQLAAKFGIE NAGKYSITSD MVDAISLSQV
GGGLGASYRS ASARLDAVVN ELSQEVMHEG HFIGIPNRVM PLNVTTNSKY ISSIETTKDT
NTDEETRTVK VSDLVTGFSM MVMPKILDDG RIQISSGFSR KQLVSIGTAQ GITLPTVDEN
ESMNTVTMNP GEVRLAMLFK DNYIQNSNGV QLLGGGTENK KSARYIAVLV GASSYKTNDL
ASNRVNIYD
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