Gene VC0395_A0351 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0351 
SymboltcpP 
ID5136307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp379581 
End bp380246 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content37% 
IMG OID640531809 
Producttoxin co-regulated pilus biosynthesis protein P 
Protein accessionYP_001216307 
Protein GI147673583 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGTATG TCCGCGTGAT TTATCAATTT CCCGATAACC TTTGGTGGAA CGAATGCAGT 
AATCAAGTCT ATTATGCACA AGATCCAATG AAGCCGGAAA GGCTGATTGG TACACCGAGC 
ATAATGCAGG CTAAGTTATT GAAAATACTC TGTGAATATC ATCCTTCCCC CTGTCCAAAT 
GATCAAATAA TTAAAGCACT TTGGCCTCAT GGATTTATCA GCTCTGAAAG TCTAACTCAG 
GCAATCAAAA GAACCAGAGA TTTTTTGAAT GATGAACATA AGACGTTGAT CGAAAATGTA 
AAGTTACAAG GTTATCGTAT TAATATTATA CAAGTTATTG TTTCTGAAAA CATTGTTGAT 
GAAGCTGACT GTAGTCAAAA AAAATCAGTA AAAGAGCGGA TAAAAATTGA GTGGGGGAAG 
ATAAACGTAG TTCCTTATCT TGTTTTTTCG GCGCTTTATG TTGCTTTGCT ACCTGTGATT 
TGGTGGAGTT ATGGCCAATG GTATCAACAT GAATTAGCCG GCATCACTCA TGATCTACGA 
GATTTAGCAA GGTTACCGGG GATAACAATC CAAAAACTGT CAGAACAAAA ACTCATGTTC 
GCTATTGATC AACATCAGTG TTCCGTGAAT TATGAACAGA AGACATTAGA ATGCACAAAA 
AATTAA
 
Protein sequence
MGYVRVIYQF PDNLWWNECS NQVYYAQDPM KPERLIGTPS IMQAKLLKIL CEYHPSPCPN 
DQIIKALWPH GFISSESLTQ AIKRTRDFLN DEHKTLIENV KLQGYRINII QVIVSENIVD 
EADCSQKKSV KERIKIEWGK INVVPYLVFS ALYVALLPVI WWSYGQWYQH ELAGITHDLR 
DLARLPGITI QKLSEQKLMF AIDQHQCSVN YEQKTLECTK N