Gene VC0395_A0350 details

Gene Information

• Locus tag: VC0395_A0350
• Symbol: tcpI
• ID: 5135212
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 377282
• End bp: 379144
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 640531808
• Product: toxin co-regulated pilus biosynthesis protein I
• Protein accession: YP_001216306
• Protein GI: 147675729
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein
• TIGRFAM ID: [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATAAAAA AAATAATTTC GGTTTTTTTA TTACTTGCGT GCATCATTAC GTCGGCTTTT 
ACTGCCTTTT TCTATCACTC GAAACTATCA GATCAAACAA AATCTATATC TAGCCTTAGT 
TCTCAGCAGG CACAAGAACG GTTGCAAAGT TATCAGGATT CTTTAGATTT TTATAAAAAA 
CTTAATATCT CTCTCTCAGT TGCAATAGCC AATTCACTTC GCGATAAAGC AGTCGAAGAA 
CTCAACGCTA TTGCTTTACG TATACAGGAA AATCATGGAT TTATTGGTGT TACCTTCGCT 
AGTTTAGATG GCACCATGTT TACAGATATT GGTACTCTAG ATTGGAATGC AAAGACATTG 
AGAAGAGATT GGTTTGTTAA AACGGTCGAA CTCGGTACTA AACATTACAC AGCTTTTGAT 
ATCGATAAAA CAACTGGGCA ACACGTTCTC ACTATTGCCA CCCCTGTTTA TGTAGGCAAC 
GACATTGTCG GCAGTGTCGC TTTAGATATT GCAGGTGATC AGATTGCCTC ACCTAACGGC 
AGTGGGATGT TTATGATGAC GGATAGGAAT TTTAATGTAT TTGCATCTGA TCTCACTCAC 
AGTACCTTAA TTGGAAAAGA TTTAACGAAA GAGAAGCCTC TGTTCAAAAA TCTGGTCTCA 
GGCCAGTATG TCACCTTCAG TGATGCTGAT AGTCATTGGT TTGCAGTGTC ACAAACAGAA 
ATAGATGGTG AAAATAAACT GTTCACTATT ATTGATATTC AACAAATCGT CCAAACATAC 
AAGCGAGATA TCCAGTTGAT TATTGCTGGA TTTAGTGGTT TTTCATGCGT GATGCTAATT 
GGACTATATT GGGTTCTAAG CAAAGAACTC TCAGGTGTTA GACAGATCAG AGAATGGATT 
CTTTCCCTTT CTGATGGTCA GATAAAAGAA CGCAGGCCTA TAAAATTCCA TAACGAGCTC 
GACACTATTG CCCAAAGTCT TGAAAATTTA CAATTTAGGC TTCTTGATGT GGTGAGAAAT 
TCTCATCGGA CTATGAATGA TTTAAGTATC AAACAGACTG ACATTACGTA TTCAATTGAA 
GGGAATACGA ATAATTCACA GCAAGAACTT GGGCTCATTG AACAAGTGGC CACAGCAACA 
ACGCAACTAT CATGTACTTC TTTTGATGTA ATGCAACAAG CTCAAAGTGC AGAGCTTAAT 
GCGGAGACGG CCCAAAAATT GATTGCTGAA AGTCATGATA TTATCGATTC ATCAAGCAAA 
CAAACCGAAA TGGTAACCCT ATCGATCCAT GAATCCCAAC AAATAATCAA TCAGTTACGC 
GAGTTTTCCG ATAATATTAG TTCGGTTACG GATGTCATTA ATAATATATC AGATCAAACT 
AACTTACTTG CCCTAAATGC AGCTATCGAG GCTGCTCGTG CAGGTGAACA GGGGCGCGGA 
TTTGCTGTAG TAGCGGATGA AGTTCGTTCT CTTGCAGTGA AAACTCAGCA ATCGACTATA 
GATATTCAAG GTATTATTTT GAAACTGCAA GAGCAATCGC AGTTGGCAGA TCAAGTGATG 
ACACGTAATG TTTCACTTAT TCATGAAACA CAAGTTGCCA ATCGGGCACT TATCGCATCC 
TTTAACCTGA TTTCTGATAA GGTTCTTGAA ATATCAAACA TAAACTCCAT CGTTTCGACT 
GCCGCAAATG AACAAAAAAT AGTAACTGAA GATGTAGCAA AACAGATGGA AGATATTCGA 
TATCTAGTTC AAGAGAATTT ATCCGCGATG GAACGAACTA AACAGGCAAA TCAGAATATC 
TCTGATTTGA CCACCAATCT AAATGATGCT CTTAGCTTTT TTAAAATTGA GCTTACTTCA 
TAA 

 

Protein sequence

MIKKIISVFL LLACIITSAF TAFFYHSKLS DQTKSISSLS SQQAQERLQS YQDSLDFYKK 
LNISLSVAIA NSLRDKAVEE LNAIALRIQE NHGFIGVTFA SLDGTMFTDI GTLDWNAKTL 
RRDWFVKTVE LGTKHYTAFD IDKTTGQHVL TIATPVYVGN DIVGSVALDI AGDQIASPNG 
SGMFMMTDRN FNVFASDLTH STLIGKDLTK EKPLFKNLVS GQYVTFSDAD SHWFAVSQTE 
IDGENKLFTI IDIQQIVQTY KRDIQLIIAG FSGFSCVMLI GLYWVLSKEL SGVRQIREWI 
LSLSDGQIKE RRPIKFHNEL DTIAQSLENL QFRLLDVVRN SHRTMNDLSI KQTDITYSIE 
GNTNNSQQEL GLIEQVATAT TQLSCTSFDV MQQAQSAELN AETAQKLIAE SHDIIDSSSK 
QTEMVTLSIH ESQQIINQLR EFSDNISSVT DVINNISDQT NLLALNAAIE AARAGEQGRG 
FAVVADEVRS LAVKTQQSTI DIQGIILKLQ EQSQLADQVM TRNVSLIHET QVANRALIAS 
FNLISDKVLE ISNINSIVST AANEQKIVTE DVAKQMEDIR YLVQENLSAM ERTKQANQNI 
SDLTTNLNDA LSFFKIELTS