| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0330 |
|---|
| Symbol | |
|---|
| ID | 5137185 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 349990 |
|---|
| End bp | 350763 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640531788 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001216286 |
|---|
| Protein GI | 147674554 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCACTATA ATTCGCCGGC ATTTATCTCG GACAGCACCA TGATTTCGAA AACCCAACTC
AAATTGATTC GCGCTTTAGG GCAGAAGAAA CAGCGCAAAG CGCACGGCTT ATTTCTGGTT
CAGGGCGAGA AAAACGTCCT AGAGCTGACC AACAGCACGC TGAAAGTACA ACACATTTTT
GCGACCGCCG AGTTTCTCGC CGAGCACGCA CAAGCCTTAG CCGGTTTCGA GTGTATTGAA
GCAACCTTGG ATGATTTAAC CAAAGTCAGC ACCTTGGTGA GCAACAACGC CGCGATTGCG
GTGGTGGCGA TCCCACACAT CGAGGTGCCT AAAGCACAAG GGTTGATGAT TGCGTTGGAT
GGCGTTTCCG ACCCCGGTAA CTTGGGCACC ATTATTCGTG TCGCGGATTG GTATGGCATT
TCGCACATCA TCGCCAGCCA AGATTGCGCC GACCCGTATA ACCCGAAAAC CATCAGCGCC
ACGATGGGCA GCTTTGGCCG CGTGCAAGTT AGCCAAGTGG ATTTACCCGA CTACTTAGCC
AAGGCGAATT TGCCAGTGTA CGGTGCATTT TTGGAAGGGG TGAGCGTGCA TCAAACCGCT
TTTCAAGCCG AAGGCATTTT GCTGATGGGC AGTGAATCTC ACGGTATTCG CGAGCAAGCG
GCGCAGTACG TGACGGATAA GATCACCATT CCGGCCTTTG GCGGCGCAGA GTCACTCAAT
GTCGCGATGG CAACGGGGAT CATTCTCGAC AATATTCGCC GTCAGCATAG TTAA
|
|---|
| Protein sequence | MHYNSPAFIS DSTMISKTQL KLIRALGQKK QRKAHGLFLV QGEKNVLELT NSTLKVQHIF
ATAEFLAEHA QALAGFECIE ATLDDLTKVS TLVSNNAAIA VVAIPHIEVP KAQGLMIALD
GVSDPGNLGT IIRVADWYGI SHIIASQDCA DPYNPKTISA TMGSFGRVQV SQVDLPDYLA
KANLPVYGAF LEGVSVHQTA FQAEGILLMG SESHGIREQA AQYVTDKITI PAFGGAESLN
VAMATGIILD NIRRQHS
|
|---|
| |