| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0317 |
|---|
| Symbol | citB |
|---|
| ID | 5137352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 336304 |
|---|
| End bp | 336996 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640531775 |
|---|
| Product | transcriptional regulator CitB |
|---|
| Protein accession | YP_001216273 |
|---|
| Protein GI | 147675694 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG4565] Response regulator of citrate/malate metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 60 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGAAT TAATCGACGT ATTGATCGTA GAGGATGAAA CGAGTATTGC TGACGTGCAC
AGCTTTTATC TCAAACAAAC CGCCCGCTTT CGCCCAGTCG GCGTGGCTCA AAGTATCAAC
GAAGCGCGCA ATATGGTGCG CATTCTCAAA CCTAAACTGA TTTTCTTGGA TAACTACCTG
CCTGATGGTC GTGGCATTGA GTTTTTGAAA GAGCTAACCC ATCAACCACA AGCGCCGGAT
GTCATTTTTA TCACCGCCGC TTCGGATATG GAGACCGTGC GCGAAGCCGT ACGCTGCGGG
GTTTTTGATT ACCTGTTAAA ACCGATCGCC TACGATCGAG TACAAAACTC GCTGGAACGG
TATCTGAAGT ACATCAGCTC GCTGCGCGCC ATGCGCGCCA ATGACAGTGT GAATCAAAGA
CACGTCGATG AGCTATTTAA TTTTCAAGCC AAAACCGAGC AGCTTGATGG GTTGCCGAAA
GGGATTGATG AGCTGACCTT AATCAAAATC CAAGAGATTT ATCACCATGA ACCGCAAGCG
GCCTACACCG CAGAATTGTT AGGACAAGCG ATTGGGATCA GCAAAACCAC GGCCAGACGT
TATTTGGAAT ATTGTGTGGC CAGTGGTTTT CTGGAAGCCT GTATTCAGCA TGGTCGGGTG
GGCCGTCCCG AACGACTTTA TCAAAAGCGC TAA
|
|---|
| Protein sequence | MMELIDVLIV EDETSIADVH SFYLKQTARF RPVGVAQSIN EARNMVRILK PKLIFLDNYL
PDGRGIEFLK ELTHQPQAPD VIFITAASDM ETVREAVRCG VFDYLLKPIA YDRVQNSLER
YLKYISSLRA MRANDSVNQR HVDELFNFQA KTEQLDGLPK GIDELTLIKI QEIYHHEPQA
AYTAELLGQA IGISKTTARR YLEYCVASGF LEACIQHGRV GRPERLYQKR
|
|---|
| |