| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0291 |
|---|
| Symbol | |
|---|
| ID | 5137391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 304889 |
|---|
| End bp | 306049 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640531749 |
|---|
| Product | outer membrane protein assembly complex subunit YfgL |
|---|
| Protein accession | YP_001216247 |
|---|
| Protein GI | 147675122 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGC TGTTCAATCA AGTGCTGGTC GCTGCGGGTG TGTTAGCTCT GCTCGCGGGT
TGTGCTAGTG AAGAAGAAAA CGTCATTATG GCGCCGTTGC CTATCGTCAA AAGCGAATTT
ACGCCGAAAA CGCTGTGGAG CGCTTCGGTG GGCGATGGTG TTGGGCACTA TTTCTCAAAA
CTGGCTCCTG ATTATGCTTA CGACAAAGTC TTCGTGGCGA GTCGAGATGG GGTAGTAAAA
GCACTTGATC CGCAAAACGG TAAAGTGATT TGGACCACGG ATCTTGAGAT TGAAGGCTCG
GCACGCTTGT CCGGTGGTAT TACCGCAGCG TTTGGTAAAT TATTCATTGG TAGCGAAAAT
GGCGTAGTCA ATGCTTTAGA CGCAGAGACC GGCGAACCGC TATGGGCTTC AGCGATTGAA
GGTGAAGTGT TAGCCGCCCC CGCGGCAGAT AACAACATCG TTATCGTGAA CACCAGCCGT
GGTGCTCTGA TTGCGCTTAA CCAAGAAGAT GGGGCGCAGA AATGGACGAT CAGTACGGAA
GTGCCTAACC TGACGCTGCG CGGTGATAGC CGTCCAACAG CGGTTGCGGG TGGTGTATTC
TGGGGAACCC CAAGTGGTCG TCTGGCTGCG GCAATTGCTG AACGTGGTCA ACTGATTTGG
CAGCAACCTG TCGGTCAGCC AAAAGGTGCA ACCGAGATTG ATCGCCTTGT CGATGTGGAT
GCCTCCCCAT TGGTCATCGG TGGCACGTTG TTTACGGTTG GATTTAACGG GCAATTGATC
GCGATCGATT TACGTTCAGG CCAGCCAATC TGGAAACGCA ATTACTCGTC AGCCACCGAC
ATGGCGACGG ATGGTAGCCG TCTTTATCTG GTTACCGATA AAGATCATCT GGTAGCGGTC
GATACCCGCA GCGGTACCGA GCTTTGGAGT AATACTCAGT TAGAGCATCG TTTGCTCACT
GCGCCAAAAA TGATTGATGA TTATTTGGTG GTCGGTGACG CGGAAGGTTA TCTGCACTGG
ATTGATCGCA ATAGCGGGGA ATTTATTGCC CAGCAACTGG TTAATGACAG CGGCTTTGCA
GTGGGTCCGC TCGCGCTGAA TGACGGTTAC GTCATCGTGA CTCGTAATGG CCAGATAAAG
AAGCTGACGA TTCAACAGTA A
|
|---|
| Protein sequence | MKKLFNQVLV AAGVLALLAG CASEEENVIM APLPIVKSEF TPKTLWSASV GDGVGHYFSK
LAPDYAYDKV FVASRDGVVK ALDPQNGKVI WTTDLEIEGS ARLSGGITAA FGKLFIGSEN
GVVNALDAET GEPLWASAIE GEVLAAPAAD NNIVIVNTSR GALIALNQED GAQKWTISTE
VPNLTLRGDS RPTAVAGGVF WGTPSGRLAA AIAERGQLIW QQPVGQPKGA TEIDRLVDVD
ASPLVIGGTL FTVGFNGQLI AIDLRSGQPI WKRNYSSATD MATDGSRLYL VTDKDHLVAV
DTRSGTELWS NTQLEHRLLT APKMIDDYLV VGDAEGYLHW IDRNSGEFIA QQLVNDSGFA
VGPLALNDGY VIVTRNGQIK KLTIQQ
|
|---|
| |