Gene VC0395_A0288 details

Gene Information

• Locus tag: VC0395_A0288
• Symbol: ispG
• ID: 5137801
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 301801
• End bp: 302931
• Gene Length: 1131 bp
• Protein Length: 376 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 640531746
• Product: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
• Protein accession: YP_001216244
• Protein GI: 147673394
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
• TIGRFAM ID: [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTATGC AACATGAGTC TCCTATCAAA CGTCGCCCCT CGACACGTAT CTATGTGGGC 
GACGTTCCTA TTGGTGATGG TGCGCCCATC GCCGTACAGT CAATGACCAA CACCCGAACC 
ACTGACGTGG CTGCCACGGT TGCGCAGATC AAGTCTTTGG AAAAAGTGGG GGCGGACATT 
GTGCGTGTTT CGGTTCCGAC TATGGAAGCT GCCGAAGCGT TCAAACTGAT CAAACAACAA 
GTCTCTGTGC CTTTAGTGGC CGATATCCAC TTCGATTATC GTATTGCGCT AAAAGTGGCG 
GAATACGGTG TGGATTGTCT ACGCATCAAC CCGGGCAATA TCGGTAACGA AGCGCGGATT 
CGTTCGGTTG TGGATTGTGC GCGCGACAAA GGCATTCCGA TTCGAATCGG GGTCAATGGC 
GGCTCGCTAG AAAAAGATCT GCAACTGAAA TACGGTGAAC CGACGCCAGA AGCCTTAGTG 
GAATCGGCGA TGCGTCATGT GGATATTTTA GATCGCCTCA ACTTTGATCA GTTCAAAGTC 
AGCGTAAAAG CCTCCGATGT TTTCCTTGCG GTAGACTCCT ATCGACTGCT GGCGAAAAAG 
ATTGATCAGC CTTTGCATCT TGGCATTACT GAAGCGGGGG GCGCGCGTGC TGGTTCAGTG 
AAGTCAGCCG TAGGCCTAGG TATGCTGCTT GCGGAAGGTA TTGGCGATAC GCTGCGTATT 
TCGCTGGCGG CCGATCCGGT AGAAGAAATC AAAGTTGGTT TTGATATTTT AAAATCGCTG 
CGCATTCGTT CGCGTGGCAT TAACTTTATT GCATGCCCAA GCTGTTCACG TCAGGAGTTT 
GATGTGATTG GCACCGTGAA TGCCCTTGAG CAGCGTCTAG AAGACGTGCT GACACCAATG 
GATGTATCAA TCATTGGCTG TGTGGTAAAC GGTCCCGGTG AAGCTGAGGT GTCTCACTTA 
GGCTTAGCGG GCAGTAATAA GAAAAGTGCG TTCTATGAAG ATGGCGTGCG CCAGAAAGAG 
CGATTTGATA ACGATGATCT CGTCGCTCAA CTGGAAGCGA AAATTCGCGC TAAAGCCGCG 
CGATTGGATG AAAAAAATCG CATCGATATC AAGCACGTAG AACAAGATTA A 

 

Protein sequence

MSMQHESPIK RRPSTRIYVG DVPIGDGAPI AVQSMTNTRT TDVAATVAQI KSLEKVGADI 
VRVSVPTMEA AEAFKLIKQQ VSVPLVADIH FDYRIALKVA EYGVDCLRIN PGNIGNEARI 
RSVVDCARDK GIPIRIGVNG GSLEKDLQLK YGEPTPEALV ESAMRHVDIL DRLNFDQFKV 
SVKASDVFLA VDSYRLLAKK IDQPLHLGIT EAGGARAGSV KSAVGLGMLL AEGIGDTLRI 
SLAADPVEEI KVGFDILKSL RIRSRGINFI ACPSCSRQEF DVIGTVNALE QRLEDVLTPM 
DVSIIGCVVN GPGEAEVSHL GLAGSNKKSA FYEDGVRQKE RFDNDDLVAQ LEAKIRAKAA 
RLDEKNRIDI KHVEQD