Gene VC0395_A0286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0286 
Symbol 
ID5135450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp299279 
End bp300400 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content48% 
IMG OID640531744 
Productribosomal RNA large subunit methyltransferase N 
Protein accessionYP_001216242 
Protein GI147675306 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0016411 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACAG AAAAAGTCAA TCTACTCGAT TTTGACCGCA AGGGTTTGCG CACGTTTTTT 
GCCGAAGAAC TGGGTGAGAA AGCGTTTCGT GCCGAGCAGG TCATGAAGTG GATTTATCAC
TTTGGTTGTG ATGACTTCGA TCAAATGAAT AACATCAACA AGCAGCTGCG TGAAAAGCTC
AAAGCCAAGT GTGAGATCCG TGCACCTTAT GTCTCGGAAG CGCAACACTC GGCGGATGGC
ACCATCAAGT GGGCAATGCG TGTGGGTGAT CAGGATGTAG AAACGGTTTA CATTCCCGAA
GATGATCGCG CGACCTTATG TGTATCTTCC CAAGTAGGGT GTGCGTTGGA ATGCAAATTC
TGCTCAACGG CGCAGCAAGG TTTTAACCGT AACCTACGCG TTTCAGAAAT CATTGGTCAG
GTTTGGCGTG CGGCACGTGA AATCGGTCTA GAGAAAGAAA CTGGGCGTCG TCCTATCACT
AACGTGGTGA TGATGGGCAT GGGTGAGCCT TTGCTCAACA TGAAAAACCT CATCCCAGCG
TTAGAGATCA TGCTCGATGA TCTCGGTTTT GGTCTTTCTA AGCGCCGTGT GACCGTTTCT
ACCTCTGGTG TGGTTTCTGG TTTAGAGCAG ATGATTGGCC AAATCGATGT GGCTTTGGCT
ATCTCATTGC ATGCGCCGAA TGACAAGCTG CGTAGCGAAA TCATGCCGAT CAACGATCGC
TGGAATATCG AAGCGTTTTT AGAGGTGGTG CGTCGCTATA TTGCATCCTC AAATGCTAAC
CGCGGTAAGG TGACCGTTGA GTATGTGCTG CTGGATCATG TGAACGATGG TACAGAGCAT
GCTCACGAGT TGGCGGAATT ACTGAAAAGG ACGCCTTGTA AAATTAACCT GATCCCGTTT
AACCCTTATC CGGGCTCACC CTACAAGAAG CCAAGTAATT CACGCATCGA CCGTTTCCAG
AAAACCTTGA TGCAATATGA GCATACCGTC ACCATTCGTA AAACTCGTGG TGATGACATT
GATGCGGCAT GTGGGCAGTT GGTGGGAGAT GTCATTGATC GCACTAAACG AACCAAAGCT
AAACAATTTG ATGGACAAGC GATTCCAGTG AAAACACTGT AA
 
Protein sequence
MTTEKVNLLD FDRKGLRTFF AEELGEKAFR AEQVMKWIYH FGCDDFDQMN NINKQLREKL 
KAKCEIRAPY VSEAQHSADG TIKWAMRVGD QDVETVYIPE DDRATLCVSS QVGCALECKF
CSTAQQGFNR NLRVSEIIGQ VWRAAREIGL EKETGRRPIT NVVMMGMGEP LLNMKNLIPA
LEIMLDDLGF GLSKRRVTVS TSGVVSGLEQ MIGQIDVALA ISLHAPNDKL RSEIMPINDR
WNIEAFLEVV RRYIASSNAN RGKVTVEYVL LDHVNDGTEH AHELAELLKR TPCKINLIPF
NPYPGSPYKK PSNSRIDRFQ KTLMQYEHTV TIRKTRGDDI DAACGQLVGD VIDRTKRTKA
KQFDGQAIPV KTL