Gene VC0395_A0281 details

Gene Information

• Locus tag: VC0395_A0281
• Symbol: hscA
• ID: 5137690
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 294519
• End bp: 296369
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 640531739
• Product: chaperone protein HscA
• Protein accession: YP_001216237
• Protein GI: 147674764
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0443] Molecular chaperone
• TIGRFAM ID: [TIGR01991] Fe-S protein assembly chaperone HscA

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.00307418
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTAC TTCAGATTGC AGAGCCGGGG CAAAGTTCGG CACCACACCA GCATAAGTTG 
GCTGCGGGTA TTGATTTAGG CACCACGAAT TCACTGGTCG CTTCTGTGCG CAGCGGAACC 
GCAAGCACAC TCGTCGATAG CCAAGGGCGT AGTATTCTCC CCTCAGTGGT GAACTATGGT 
GCTGATGCGA CTCGCGTCGG CTATCCCGCT CGTGAACAAG CTGAAACCGA TCCGCACAAC 
ACTGTGATTT CGGTAAAACG TCTGCTTGGA CGTTCACTGC AAGACATCAA CCAGCGTTAT 
CCTCATCTGC CTTACCGCTT TAAAGCGAGT GAGAAAGGCT TGCCGATTGT GCAAACCGCG 
CAAGGGGATA AAAACCCTAT TCAAATCTCT GCCGATATTT TGAAAGCCTT GGCAGAACGT 
GCCACCGCCA CCTTAGGTGG CGAATTGGCG GGAGTGGTCA TCACGGTACC TGCGTATTTT 
GATGATGCGC AGCGGGTTGC GACTAAAGAT GCTGCGGCGT TAGCGGGCTT GCATGTGCTG 
CGTTTACTCA ATGAGCCGAC AGCAGCGGCG ATTGCTTATG GTTTGGACTC AGGCCAAGAA 
GGTGTGATCG CGGTGTACGA TCTAGGTGGC GGCACCTTCG ATATTTCGAT TTTACGCCTT 
TCACGCGGCG TGTTTGAAGT GCTCGCAACC GGTGGTGACT CTGCACTGGG TGGTGATGAT 
TTTGACCATC TGATCGCCGA TCACCTGCAA GCACAAATCG GACTCACCAG TTTAACCGCT 
GAGCAGCAGC GCGCGCTGAT TAACGCCGCG ACACAAGCCA AAATCGATCT GACTGAATAC 
ATGACGGCTG AGCTGAATGT GCTTGGCTGG CAAGGTTCGC TTACTCGTGA AGAGTTGGAA 
AACCTAATTG CACCATTGTT GAAAAAGACG CTACTTTCTT GCCGCCGCGC ATTGAAAGAT 
GCCGGTGTTG AAGCGGATGA AGTGCTCGAA GTCGTGATGG TGGGCGGTTC AACCCGCACA 
CCGTTTGTGC GCGAGCAAGT GGGGGAGTTT TTTGGCCGCA CACCACTGAC CAGCATCAAC 
CCAGACGAAG TTGTGGCGAT TGGTGCGGCG ATTCAAGCGG ACATTCTGGC CGGCAATAAG 
CCTGATGCAG AAATGTTGCT GCTCGATGTC ATCCCACTCT CTTTGGGGAT TGAAACCATG 
GGCGGTTTGG TCGAAAAAAT CATCCCACGC AACACCACCA TTCCTGTCGC TCGCGCGCAA 
GAGTTTACCA CCTTCAAAGA TGGGCAAACG GCGATGAGTG TGCATGTGGT TCAAGGGGAG 
CGTGAAATGG TTGATGACTG TCGCTCTCTG GCACGCTTCT CACTCAAAGG TATACCGCCG 
ATGGCGGCAG GTGCTGCGCA CATTCGCGTG ACTTATCAAG TGGATGCGGA TGGTTTACTT 
TCCGTGACGG CTTTGGAAAA AAGCACCGGT GTACAAGCAG AGATTCAGGT TAAGCCATCT 
TATGGTTTAA GCGATGACGA AGTCACCCAG ATGCTCAAAG ACTCCATGGC CTATGCTAAA 
GAGGATATGC TGGCGCGTGC GTTGGCAGAG CAGCGCGTAG AAGCCGATCG CGTGATTGAA 
GGCTTAGTTT CAGCCCTGCA AGCGGATGGT GATGAGCTGC TGAACGAGCA AGAGCGCCAA 
ACTTTATTAC AGGCGATCGA GCGCTTGATT GAACTGCGCA ATGGCGATAA TGCGGATGCC 
ATTGAGCAAG GAATAAAAGA CACAGACAAA GCGAGTCAGG ATTTTGCGTC AAGACGAATG 
GATAAATCGA TTCGTAGCGC ACTGGCTGGC CACTCCGTTG ACGAGATTTG A 

 

Protein sequence

MALLQIAEPG QSSAPHQHKL AAGIDLGTTN SLVASVRSGT ASTLVDSQGR SILPSVVNYG 
ADATRVGYPA REQAETDPHN TVISVKRLLG RSLQDINQRY PHLPYRFKAS EKGLPIVQTA 
QGDKNPIQIS ADILKALAER ATATLGGELA GVVITVPAYF DDAQRVATKD AAALAGLHVL 
RLLNEPTAAA IAYGLDSGQE GVIAVYDLGG GTFDISILRL SRGVFEVLAT GGDSALGGDD 
FDHLIADHLQ AQIGLTSLTA EQQRALINAA TQAKIDLTEY MTAELNVLGW QGSLTREELE 
NLIAPLLKKT LLSCRRALKD AGVEADEVLE VVMVGGSTRT PFVREQVGEF FGRTPLTSIN 
PDEVVAIGAA IQADILAGNK PDAEMLLLDV IPLSLGIETM GGLVEKIIPR NTTIPVARAQ 
EFTTFKDGQT AMSVHVVQGE REMVDDCRSL ARFSLKGIPP MAAGAAHIRV TYQVDADGLL 
SVTALEKSTG VQAEIQVKPS YGLSDDEVTQ MLKDSMAYAK EDMLARALAE QRVEADRVIE 
GLVSALQADG DELLNEQERQ TLLQAIERLI ELRNGDNADA IEQGIKDTDK ASQDFASRRM 
DKSIRSALAG HSVDEI