| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0273 |
|---|
| Symbol | secF |
|---|
| ID | 5135160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 288417 |
|---|
| End bp | 289364 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640531731 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001216229 |
|---|
| Protein GI | 147673073 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAAA TCCTAAAAGC AGACAAAATG ATCGACTTTA TGCGTTGGTC GAAATTCGCC
TTCGCCTTGT CGCTGGTGAT GATTGCCGCA TCGATTTTTA CTCTGTCTAC CAAATGGCTG
AACTGGGGGC TGGATTTCAC GGGCGGTACA TTGATTGAAG TGGGCTTTGA GCAGCCTGCC
AATCTGGAGC AAATCCGTAG CGCCCTTGAA GCGAAAGGTT TTGGTGATGC TACCGTGCAA
AACTTTGGTT CTGCACGTGA TGTAATGGTA CGTCTACGTC CTCGTGATGA TATGGCGGGT
GAGGCGTTGG GTAACCAGAT CCTCGCGGCG ATCAAAGAAG GTACCGGCGG CAACGTGGAA
ATGCGCCGTA TCGAATTCGT TGGCCCGAAC GTGGGTGATG AGCTCACTGA AGCGGGCGGC
TTGGCGATTC TGGTTTCTTT GCTGTGTATC TTGCTTTACG TGTCAGTACG CTTTGAATGG
CGTTTGGCTG CAGGTGCGGT GCTGGCATTG GCGCACGACG TCATCATTAC TTTAGGCATC
TTCTCTATCT TACAGATTGA AGTTGATCTC ACGATTGTTG CAGCATTGCT GACGGTTGTG
GGTTACTCAC TCAACGATAC CATCGTGGTG TTTGACCGGA TCCGTGAAAA CTTCCGTAAG
ATGCGCAAAG AAGAACCCGC AGAGATCATG AATAGCTCAA TTACACAAAC TTTGAGCCGT
ACTTTGATCA CTTCAGGTAC CACTTTGTTT GTGGTGATTG CCCTCTTTAC TCAAGGTGGA
GCAATGATCC ACGGTTTTGC GCTGGCCTTG TTGCTGGGTA TTACCGTTGG TACTTATTCT
TCTATCTATG TGGCATCAGC ACTGGCGCTG AAACTCGGGA TCACCCGTGA GCACTTATTG
CCTCCACAAG TAGAGAAAGA AGGCGCAGAG TTGGATGAAA TGCCGTAG
|
|---|
| Protein sequence | MFQILKADKM IDFMRWSKFA FALSLVMIAA SIFTLSTKWL NWGLDFTGGT LIEVGFEQPA
NLEQIRSALE AKGFGDATVQ NFGSARDVMV RLRPRDDMAG EALGNQILAA IKEGTGGNVE
MRRIEFVGPN VGDELTEAGG LAILVSLLCI LLYVSVRFEW RLAAGAVLAL AHDVIITLGI
FSILQIEVDL TIVAALLTVV GYSLNDTIVV FDRIRENFRK MRKEEPAEIM NSSITQTLSR
TLITSGTTLF VVIALFTQGG AMIHGFALAL LLGITVGTYS SIYVASALAL KLGITREHLL
PPQVEKEGAE LDEMP
|
|---|
| |