Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0272 |
Symbol | secD |
ID | 5137465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 286549 |
End bp | 288402 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640531730 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001216228 |
Protein GI | 147675510 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.424344 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTAAACC GTTATCCGTT ATGGAAGTAT CTGATGGTGA TGTTAACCAT CGCCGTTGCA GCCTTGTATG CACTTCCAAA TATCTACGGT GAAGATCCAG CTATCCAAAT AACAGGGGCG CGTGGCGCCT CTGTTGATAT GTCAACGCTG GATGCTGTCA CCGATGCGCT CAATAAAGCG CAACTCTCCC AAAAATCCAT TGCTCTTGAA AATGGCTCAA TCCTTGTTCG TTTCAATGAT ACGGATACGC AAATCAGCGC CCGAGATATC ATCAGTGAAG CGTTAGGTAA GGATAAAATC GTCGCGTTAA ACCTCGCTCC TTCAACGCCA GATTGGCTAG AGTCAATTGG TGCTGCACCA ATGAAACTCG GCCTTGATCT GCGTGGTGGT GTGCACTTCC TGATGGAAGT GGATATGGAT GCCGCGATGG AAAAATTGGT CAGCCAACAA GAAGAAGCTT TCCGCAGTGA TCTGCGTGAC GAGAAAATTC GTTACCGCGC GATCCGTCCA TTATCGGATG CGGTTGAAGT GACCCTGCGT GATGCCGAGC AGCTTGCGCA AACTAAGCTG CTTCTGGAGT CGAAACACCG TGATATGACC TTTACGACTT CAGAATCCGA TGGCCGTTTT GTGCTCGTGG CTAAGTTTAC CGAAGCTCGC TTACAGGAAA TTCGCAACTA CGCCGTTGAG CAGAACATCA CTATTTTGCG TAACCGGGTG AACGAACTGG GTGTGGCTGA GCCTCTGGTT CAACGCCAAG GTGCGACACG TATCGTGGTA GAGCTGCCGG GTGTACAAGA CACCGCGCGT GCTAAAGAAA TCTTAGGCGC GACCGCAACC CTTGAGTTTC GTGAAGTGGA CGATAAAGCC GACCTTGCCG CTGCGGCAGC AGGACGTGCG CCAGCTGGCA GCGAAATCAA GTTCGATCGT AATGGTCGTC CTGTAGTGCT GAAAAAGCGC GTGATTCTGG GTGGTTCAAG CATTACCGAT GCAAGCTCAA GCGCCGACGA ATATGGTCGC CCACAGGTGA ACATTTCGCT CGATAGCGAA GGCGGCAACA AGATGTCAGC GTTCTCGAAA AAGAACATTG GCAAGTTGAT GGCGACGGTA TTTGCTGAAT ACAAAGACAG CGGTAAGCGC TCTCCTGAAG GTAAAGTCAT TCTGACCAAG CATGAAGAAG TGATTAACCA AGCGACGATT CAGTCGGCAT TGGGACGTAA CTTCCGTATT ACTGGGATTG ATTCACCGGC AGAAGCGCAT AACCTTGCTC TGCTATTGCG TGCCGGTGCT TTGATTGCGC CAATTTCTAT CGTCGAAGAG CGCACCATTG GTCCATCAAT GGGTCAGCAG AATATCGATA TGGGTATTCA GGCCTGTATT TGGGGTATGG TGGCGGTAAT GCTGTTTACG GTTCTTTACT ACCGTAAGTT TGGCATGATC GCTAACATCG CACTGATGGC GAACCTCGTG CTGATCATTG GCGTAATGTC GATGATCCCG GGCGCAACCA TGACCTTGCC GGGTATTGCT GGTATCGTGT TGACGGTCGG TATGGCGGTC GATGCCAACG TACTGATTTT CGAGCGTATT CGTGAAGAGC TACGCGAAGG AAAAAATCCG CAGCAAGCGA TTCATCAAGG TTACGCTAAC GCATTCAGTA CCATTGCCGA TGCCAACATC ACCACCTTAA TTACGGCGAT CATTTTGTTT GCCGTTGGTA CAGGGGCGAT TAAAGGCTTC GCAGTGACGC TGTCTATCGG TATTTTAACC TCTATGTTTA CCGCGATTGT GGGTACACGT TGTATCGTGA ACCTGCTGTA TGGCGGCAAA CGTATCAACA AATTGTCGAT CTGA
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Protein sequence | MLNRYPLWKY LMVMLTIAVA ALYALPNIYG EDPAIQITGA RGASVDMSTL DAVTDALNKA QLSQKSIALE NGSILVRFND TDTQISARDI ISEALGKDKI VALNLAPSTP DWLESIGAAP MKLGLDLRGG VHFLMEVDMD AAMEKLVSQQ EEAFRSDLRD EKIRYRAIRP LSDAVEVTLR DAEQLAQTKL LLESKHRDMT FTTSESDGRF VLVAKFTEAR LQEIRNYAVE QNITILRNRV NELGVAEPLV QRQGATRIVV ELPGVQDTAR AKEILGATAT LEFREVDDKA DLAAAAAGRA PAGSEIKFDR NGRPVVLKKR VILGGSSITD ASSSADEYGR PQVNISLDSE GGNKMSAFSK KNIGKLMATV FAEYKDSGKR SPEGKVILTK HEEVINQATI QSALGRNFRI TGIDSPAEAH NLALLLRAGA LIAPISIVEE RTIGPSMGQQ NIDMGIQACI WGMVAVMLFT VLYYRKFGMI ANIALMANLV LIIGVMSMIP GATMTLPGIA GIVLTVGMAV DANVLIFERI REELREGKNP QQAIHQGYAN AFSTIADANI TTLITAIILF AVGTGAIKGF AVTLSIGILT SMFTAIVGTR CIVNLLYGGK RINKLSI
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