Gene VC0395_A0272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A0272 
SymbolsecD 
ID5137465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp286549 
End bp288402 
Gene Length1854 bp 
Protein Length617 aa 
Translation table11 
GC content50% 
IMG OID640531730 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001216228 
Protein GI147675510 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.424344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTAAACC GTTATCCGTT ATGGAAGTAT CTGATGGTGA TGTTAACCAT CGCCGTTGCA 
GCCTTGTATG CACTTCCAAA TATCTACGGT GAAGATCCAG CTATCCAAAT AACAGGGGCG
CGTGGCGCCT CTGTTGATAT GTCAACGCTG GATGCTGTCA CCGATGCGCT CAATAAAGCG
CAACTCTCCC AAAAATCCAT TGCTCTTGAA AATGGCTCAA TCCTTGTTCG TTTCAATGAT
ACGGATACGC AAATCAGCGC CCGAGATATC ATCAGTGAAG CGTTAGGTAA GGATAAAATC
GTCGCGTTAA ACCTCGCTCC TTCAACGCCA GATTGGCTAG AGTCAATTGG TGCTGCACCA
ATGAAACTCG GCCTTGATCT GCGTGGTGGT GTGCACTTCC TGATGGAAGT GGATATGGAT
GCCGCGATGG AAAAATTGGT CAGCCAACAA GAAGAAGCTT TCCGCAGTGA TCTGCGTGAC
GAGAAAATTC GTTACCGCGC GATCCGTCCA TTATCGGATG CGGTTGAAGT GACCCTGCGT
GATGCCGAGC AGCTTGCGCA AACTAAGCTG CTTCTGGAGT CGAAACACCG TGATATGACC
TTTACGACTT CAGAATCCGA TGGCCGTTTT GTGCTCGTGG CTAAGTTTAC CGAAGCTCGC
TTACAGGAAA TTCGCAACTA CGCCGTTGAG CAGAACATCA CTATTTTGCG TAACCGGGTG
AACGAACTGG GTGTGGCTGA GCCTCTGGTT CAACGCCAAG GTGCGACACG TATCGTGGTA
GAGCTGCCGG GTGTACAAGA CACCGCGCGT GCTAAAGAAA TCTTAGGCGC GACCGCAACC
CTTGAGTTTC GTGAAGTGGA CGATAAAGCC GACCTTGCCG CTGCGGCAGC AGGACGTGCG
CCAGCTGGCA GCGAAATCAA GTTCGATCGT AATGGTCGTC CTGTAGTGCT GAAAAAGCGC
GTGATTCTGG GTGGTTCAAG CATTACCGAT GCAAGCTCAA GCGCCGACGA ATATGGTCGC
CCACAGGTGA ACATTTCGCT CGATAGCGAA GGCGGCAACA AGATGTCAGC GTTCTCGAAA
AAGAACATTG GCAAGTTGAT GGCGACGGTA TTTGCTGAAT ACAAAGACAG CGGTAAGCGC
TCTCCTGAAG GTAAAGTCAT TCTGACCAAG CATGAAGAAG TGATTAACCA AGCGACGATT
CAGTCGGCAT TGGGACGTAA CTTCCGTATT ACTGGGATTG ATTCACCGGC AGAAGCGCAT
AACCTTGCTC TGCTATTGCG TGCCGGTGCT TTGATTGCGC CAATTTCTAT CGTCGAAGAG
CGCACCATTG GTCCATCAAT GGGTCAGCAG AATATCGATA TGGGTATTCA GGCCTGTATT
TGGGGTATGG TGGCGGTAAT GCTGTTTACG GTTCTTTACT ACCGTAAGTT TGGCATGATC
GCTAACATCG CACTGATGGC GAACCTCGTG CTGATCATTG GCGTAATGTC GATGATCCCG
GGCGCAACCA TGACCTTGCC GGGTATTGCT GGTATCGTGT TGACGGTCGG TATGGCGGTC
GATGCCAACG TACTGATTTT CGAGCGTATT CGTGAAGAGC TACGCGAAGG AAAAAATCCG
CAGCAAGCGA TTCATCAAGG TTACGCTAAC GCATTCAGTA CCATTGCCGA TGCCAACATC
ACCACCTTAA TTACGGCGAT CATTTTGTTT GCCGTTGGTA CAGGGGCGAT TAAAGGCTTC
GCAGTGACGC TGTCTATCGG TATTTTAACC TCTATGTTTA CCGCGATTGT GGGTACACGT
TGTATCGTGA ACCTGCTGTA TGGCGGCAAA CGTATCAACA AATTGTCGAT CTGA
 
Protein sequence
MLNRYPLWKY LMVMLTIAVA ALYALPNIYG EDPAIQITGA RGASVDMSTL DAVTDALNKA 
QLSQKSIALE NGSILVRFND TDTQISARDI ISEALGKDKI VALNLAPSTP DWLESIGAAP
MKLGLDLRGG VHFLMEVDMD AAMEKLVSQQ EEAFRSDLRD EKIRYRAIRP LSDAVEVTLR
DAEQLAQTKL LLESKHRDMT FTTSESDGRF VLVAKFTEAR LQEIRNYAVE QNITILRNRV
NELGVAEPLV QRQGATRIVV ELPGVQDTAR AKEILGATAT LEFREVDDKA DLAAAAAGRA
PAGSEIKFDR NGRPVVLKKR VILGGSSITD ASSSADEYGR PQVNISLDSE GGNKMSAFSK
KNIGKLMATV FAEYKDSGKR SPEGKVILTK HEEVINQATI QSALGRNFRI TGIDSPAEAH
NLALLLRAGA LIAPISIVEE RTIGPSMGQQ NIDMGIQACI WGMVAVMLFT VLYYRKFGMI
ANIALMANLV LIIGVMSMIP GATMTLPGIA GIVLTVGMAV DANVLIFERI REELREGKNP
QQAIHQGYAN AFSTIADANI TTLITAIILF AVGTGAIKGF AVTLSIGILT SMFTAIVGTR
CIVNLLYGGK RINKLSI