| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0234 |
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| Symbol | |
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| ID | 5137596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 244383 |
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| End bp | 245462 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640531694 |
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| Product | putative spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein |
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| Protein accession | YP_001216197 |
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| Protein GI | 147674245 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCAATT TTTGTAACGA ATGGGTATCG TATTCACAAA TGATCAAACG CTTTCTGTCG
CTGATGGTAT TGAATACTGT CTGTTATCAA GCCAGCGCTT TGGAACTGAA TGTCTACCTT
TGGGAAGATA CGATTGCACC AAGCGTAGTT GAGGCATGGC ATAAAAAAAC CGGCGTCTCC
GTTAATCTCT ACCATTTCGA TAATGATGAT GAACGCAGTT TATTAATGCT CAAAAGCGTA
CAACTGCCCT TTGACATCAT GGTGTTGGAT AACGTCTCCG CGTTCATTTT CTCAAGGCAA
AATGTTTTTG AGGATCTGAC CGCCCTTCCT AATCGTGCGA ATAATGACCC TATGTGGCTA
CAAGCTTGTG GCACCCATGC GGTACCTTAT TTCTGGGGCT CAGTCGGCAT TGCCTATCGC
AAAAGCTTGT TTGATAAACC TCCAACGCAG TGGAGTGAGG TCGTCGATAT CGCTCCGGCG
CATCGTGGAC GAGTGGGTAT GCTTAAAGAC AGTGTCGAAA CACTACTGCC TGCACTGTAC
ATGCTCAACG CCTCTCCCAT TACCGATTCT ATCGACACAC TAAGGCAAGC GTATCGTCTC
TTAGACGCCG CCAATCCCCA TATCCTGACC TATGAGTATG TATTGAGCTA TGTACGCAGC
CACCCACAAA CCGACAATCT ACATATGGCG GTCTCTTACA GTGGCGATCA CTATTCACTG
AACCGCTTCT TCAATACTCA AGACTGGGAC TTTAGCGTTC CAGAAGGCCG CCCTTATTTG
TGGGTTGATT GTATGGCCGT AAATAGCGTT TCTCCCAACA CAGTGCAGGC CAAAGCTTTT
TTGGATTTCT TGATGAAACC TGACATTGCC GCAATCAATG CCGAATATAT TCGAGCTGCA
AGCCCAAACT ACAAAGCACG CGCTTTGCTC CCTGTAGAGC ACCGAGAAGA TCTCTCGATT
TATCTCCCAG AGCAGCGATT GGCGGAGGGA ATAATCTACA GCGAACTCTC GGCGAAAAAC
CTCAGTCTGC GTGCCAAAAT CATCAGCAGT GTGACTTACC AATATGAAGC TAAACCATAG
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| Protein sequence | MTNFCNEWVS YSQMIKRFLS LMVLNTVCYQ ASALELNVYL WEDTIAPSVV EAWHKKTGVS
VNLYHFDNDD ERSLLMLKSV QLPFDIMVLD NVSAFIFSRQ NVFEDLTALP NRANNDPMWL
QACGTHAVPY FWGSVGIAYR KSLFDKPPTQ WSEVVDIAPA HRGRVGMLKD SVETLLPALY
MLNASPITDS IDTLRQAYRL LDAANPHILT YEYVLSYVRS HPQTDNLHMA VSYSGDHYSL
NRFFNTQDWD FSVPEGRPYL WVDCMAVNSV SPNTVQAKAF LDFLMKPDIA AINAEYIRAA
SPNYKARALL PVEHREDLSI YLPEQRLAEG IIYSELSAKN LSLRAKIISS VTYQYEAKP
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