| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0230 |
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| Symbol | slt |
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| ID | 5137758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 239162 |
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| End bp | 241108 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640531690 |
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| Product | soluble lytic murein transglycosylase |
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| Protein accession | YP_001216193 |
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| Protein GI | 147673203 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 51 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCGCC TGACGGTATT TAAGCCGCGT AGCCTTGTTT CGATCTTGAT GTTCACCACG
GTATGGGCAG TGGGCTCAGC GAGCGCCAGT ACTTTGGATT TGGAAGCGCA GAGAGCTCAA
TATGATAAAG CGCAGCGTTG GTTGGACGAA AAGAATGTCG CTCAATACCA ACGTATTCGT
AAGCAGATCG ATAGCTATCC CTTAACCCCT TATCTCGATT ATCGCGCTTT TCTTATCGAT
CTCGGCAGTA AGCCGCCGAT CGCAGTACGC AATTTTATCG ATAGTCATAA AGAGTACCCT
TTTTCAGCTC GGATCGCTGC GCCCTATTTA GACGCTTTAG CGCGCAGCAA AAAATGGTCG
GCATTGCTGC AATTTCAAAC TCAACTGCCC AATGGCGAAA CTTACCAATG CCATTACTAC
AACGCCAAAC TGCAAACCGG AAAGCGTAAT GAGGCGTTTG AAGGTGCGAA AAAGCTGTGG
CTTAACGGTG CCAGTATCGC CGATGCTTGT GATCCGTTAT TTGCCGAGTG GGATCGCGTT
GGGGGCTTGA GTGACGATTG GGTTTTAAAA CGGGCTTTAC TCGCTTTTGA AGGCCGTAAC
CGTAACCTCA TCGTCTATCT ACAGAAGAAG CTGGATGGCA AAAAATCACA AGCTAAAGCG
CAAGGCATGC TTGAGCTATT TGATAAACCT GAGCGAGTGT TAGCTTACAG CCGTAAAGCA
TCGCAAGATC CGATTAATCA AAAGTTAGCA GAGTTGGCGT TACAAAAGTG GGCAAGATCA
GAGCCTCAAG AAGCGCAAGC TGTCTTCAAT GATGTCGCGA AAGCCCAAGG CTGGAATCAA
GAGCAGAAAG GGCGAGTAGC TCGTTTTATT GCAATCCGTT TGATGGATAC TGAAGAGGCT
GCGATTGCTA AATGGCGTGA TGAGGTGACT CGCACTAGCC AAGATGTGCG TTTGATTGAA
GCGCGTATTC GACTAGCACT GCGTGAGAAT GATTGGCGTG GTTTGAGTCA ATGGATTGCG
GTGTTACCAG AGCAAGAGCG TAAAACTCTG CGTTGGCAAT ATTGGCAAGG TCGCAGTGAA
ATCGCGCTGG GTAAGAAAAA AGAAGGTACC GAGCGCTTAA AAGCTTTGCT TGGACAACGC
AGTTTTTACA GCGTAGCGGC AGCCAAAATT TTGCAGCAGT CGGTCAATTA TCCGACCAGT
ACAGTAACGC TGGATATGAA GCAGATTAAA GCTCATAAAA AAGCGCTGGC CAGAATTGAT
GAACTGATTG CCTTGGATAA AGTGCCGGCG GCAAAAAGTG AATGGCGTTG GTTGCTTGAT
CGAGTTTCTC AGAAAGAAAA AGAGATGTTG GCAGCGTATG CCGCAGATTC AGGTTGGTAT
CAGATGACCA TTGCGGCGAC CATTTCCGCC AGCCTCTGGG ATAACAATCA ACTGCGTTTT
CCTGTCGTAC ATCAGAACTT GTTTACCTTG CATGGTCGAA AAAATGGTGT AGATCCGATC
ACATTAATGT CTTTAGCCAG ACAAGAAAGT GCGCTTAACC CAGATGCGCA ATCACCTGTT
GGCGCACGGG GCTTAATGCA GATTATGCCG GATACTGCGC GCTACACGGC AAGGAAATAC
CAATTGAGCT ACTCCAATCC TGACGAACTC TATCAAGTGG GTAAGAATAT TGAGATCGGT
AGCCGTTATC TCAGCAGTTT GCTTGAGCGT TATGACCAGA ACCGAATCTT GGCTTTTGCT
GCCTACAATG CAGGACCAAG TCGGGTCGAT AGTTGGTTGA AACGTAGCCA AGGTAAGCTG
GATGCGTATG GCTTTATTGA AGCAATCCCC TTTGCTGAAA CCCGCGGTTA TGTGCAGAAC
ATTTTGATGT TTGAAACCTA CTATCGGGAT TTGATGGGCG TACAAGGTCG CTTCTTGAAT
GAGCATGAGT TAAATACAAA GTATTGA
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| Protein sequence | MTRLTVFKPR SLVSILMFTT VWAVGSASAS TLDLEAQRAQ YDKAQRWLDE KNVAQYQRIR
KQIDSYPLTP YLDYRAFLID LGSKPPIAVR NFIDSHKEYP FSARIAAPYL DALARSKKWS
ALLQFQTQLP NGETYQCHYY NAKLQTGKRN EAFEGAKKLW LNGASIADAC DPLFAEWDRV
GGLSDDWVLK RALLAFEGRN RNLIVYLQKK LDGKKSQAKA QGMLELFDKP ERVLAYSRKA
SQDPINQKLA ELALQKWARS EPQEAQAVFN DVAKAQGWNQ EQKGRVARFI AIRLMDTEEA
AIAKWRDEVT RTSQDVRLIE ARIRLALREN DWRGLSQWIA VLPEQERKTL RWQYWQGRSE
IALGKKKEGT ERLKALLGQR SFYSVAAAKI LQQSVNYPTS TVTLDMKQIK AHKKALARID
ELIALDKVPA AKSEWRWLLD RVSQKEKEML AAYAADSGWY QMTIAATISA SLWDNNQLRF
PVVHQNLFTL HGRKNGVDPI TLMSLARQES ALNPDAQSPV GARGLMQIMP DTARYTARKY
QLSYSNPDEL YQVGKNIEIG SRYLSSLLER YDQNRILAFA AYNAGPSRVD SWLKRSQGKL
DAYGFIEAIP FAETRGYVQN ILMFETYYRD LMGVQGRFLN EHELNTKY
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