| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0229 |
|---|
| Symbol | |
|---|
| ID | 5136596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 237133 |
|---|
| End bp | 238800 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640531689 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_001216192 |
|---|
| Protein GI | 147675380 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAT ACGTATATAC CATGTCTCGG GTGAGCAAGA TTGTGCCACC CAAGCGTCAA
ATTCTGAAAG ATATCTCCTT GAGTTTCTTC CCGGGTGCCA AAATTGGTGT TCTGGGCCTT
AACGGTGCGG GTAAATCGAC CCTGCTGCGT ATCATGGCAG GCATTGACAA AGACATCGAC
GGTGAAGCTC GTCCACAACC CGGTTTGAAA GTGGGTTATC TGCCCCAAGA GCCTAAGTTG
GATGAGAGTA AAACCGTACG TGAAGTTGTC GAAGAAGCCG TTGCGGATGT GGCTTACGCG
CTTAAGCGTC TTGATGAAGT TTATGCCGCG TACGCTGAGC CTGATGCAGA TTTTGATGCT
CTGGCTAAAG AACAGGGTGA ACTGGAAGCG CTGATCCAAG CGAAAAATGG CCACAACCTA
GATAACGCTC TAGAGCGTGC CGCCGATGCA CTGCGTCTGC CGGAATGGGA TGCGCAAGTG
AAATTCCTCT CTGGTGGTGA GCGTCGTCGT GTGGCGATCT GTCGTCTTCT GCTGGAAAAT
CCAGACATGC TGCTGCTCGA CGAACCCACC AACCACTTGG ATGCCGAATC AGTGGCTTGG
CTGGAGCGTT TCTTAGTCGA TTACGCAGGG ACTGTGGTCG CGATTACCCA CGACCGTTAC
TTCCTCGATA ACGCTGCGGG CTGGATTCTG GAACTTGACC GTGGTGAAGG TATTCCATGG
CAAGGTAACT ACACTTCATG GCTAGAGCAA AAAGATGCTC GTCTGAAGCA AGAAGCGTCT
CAAGAGAAAG CGCGCCAAAA AACCATTGAG AAAGAGCTGG AATGGGTTCG TCAGAATCCA
AAAGGTCGTC AGGCTAAATC GAAAGCGCGT ATGGCACGTT TTGAAGAGCT GCAAAATACT
GAGCACCAAA AACGTAACGA AACCAACGAG CTGTTCATCC CGCCTGGTGA GCGCCTAGGT
GACAAAGTGA TTGAAGTGAA AAACCTCACC AAATCATTCG ATGGTCGTGT TCTGATTGAT
GATCTTTCTT TCAGCATGCC AAAAGGCGCG ATTGTCGGCA TCATCGGCCC GAACGGTGCG
GGTAAATCAA CCCTATTCAA AATGCTGAGC GGTGTAGAAA AGCCGGATTC AGGCACCATC
GAGCTGGGTG ATACTGTGAA ACTAGCCTCA GTGGATCAGT TCCGTGACAG CATGAACGAC
AAGCACACCG TATTCCAAGA GATTTCTGAA GGTGCGGATA TCATTCGCAT CAACAACTTC
GAAATCCCTG CTCGTGCTTA CTGTTCACGC TTTAACTTCA AAGGCGTTGA TCAGCAAAAA
GTGATTGGCG AGCTGTCTGG TGGTGAGCGT AACCGTGTCC ACTTGGCCAA ACTGCTTAAA
GCGGGCGGCA ACGTGCTGTT ACTCGACGAA CCTACCAACG ATCTGGACGT CGAAACGCTG
CGTGCTCTGG AAGAAGCGCT ACTAGAATTC CCGGGCTGTG CTATGGTGAT CTCGCATGAC
CGTTGGTTCC TAGACCGTAT TGCCACCCAC ATCCTAGATT ACCGTGATGA AGGTAAAGTG
AACTTCTACG AAGGTAACTA CACCGAGTAC ATGGAGTGGC TGAAGCAGAC TCTGGGCGCG
CAAGCAGCAG AGCCTCACCG TATTAAGTAC AAGCGCATTA CCAAGTAA
|
|---|
| Protein sequence | MAEYVYTMSR VSKIVPPKRQ ILKDISLSFF PGAKIGVLGL NGAGKSTLLR IMAGIDKDID
GEARPQPGLK VGYLPQEPKL DESKTVREVV EEAVADVAYA LKRLDEVYAA YAEPDADFDA
LAKEQGELEA LIQAKNGHNL DNALERAADA LRLPEWDAQV KFLSGGERRR VAICRLLLEN
PDMLLLDEPT NHLDAESVAW LERFLVDYAG TVVAITHDRY FLDNAAGWIL ELDRGEGIPW
QGNYTSWLEQ KDARLKQEAS QEKARQKTIE KELEWVRQNP KGRQAKSKAR MARFEELQNT
EHQKRNETNE LFIPPGERLG DKVIEVKNLT KSFDGRVLID DLSFSMPKGA IVGIIGPNGA
GKSTLFKMLS GVEKPDSGTI ELGDTVKLAS VDQFRDSMND KHTVFQEISE GADIIRINNF
EIPARAYCSR FNFKGVDQQK VIGELSGGER NRVHLAKLLK AGGNVLLLDE PTNDLDVETL
RALEEALLEF PGCAMVISHD RWFLDRIATH ILDYRDEGKV NFYEGNYTEY MEWLKQTLGA
QAAEPHRIKY KRITK
|
|---|
| |