| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0196 |
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| Symbol | |
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| ID | 5137111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 203173 |
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| End bp | 204507 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640531656 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_001216159 |
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| Protein GI | 147675556 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0400471 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACTC AATTCCGTAT GGATTCAGTA CCTGGCTCTC TTGTTGTGGT GGGAGGTACC
TATGAACCCT GGCTGGCTGT GTTGGAAAAA GTGGGTTGGC GCTGTACTCA AGTAGCAGAT
TTGCGCAAAG CCGATGCGTT ATTTGTCGAG ACTGGGCCAT GTATTGGTAT TGTGGATTTA
AGCCATGATG AATTTAGCCT TAACGGGATT GCGAATTTGG TGAGTAGCCA TAAGCAAGTC
CGTTGGCTGG CGTTCATTCG TGAGGCGCAG CTCAGTTCAG ATACCATTTG CCAATTTATC
GTTAACTTCT GTATCGACTT TTTTACTGCG CCGATCCCTG ATGCTCAGTT GTTGAGCACG
ATTGGTCACC AACTTGGCAT GCTGAAGTTG GAAAAGAAAG TGTGGCCACA TTTTGGCTCG
GCCGGCAACA TGGGCTTGAT TGGGGAATCT ATGCCTATGA AGCGTTTGCG CGATCAGATC
AAACGCATTG GCCCGACCGA TGTCAGTATT TTGATCTATG GCGAAAGTGG TACTGGGAAA
GAAACGGTGG CTAAGGCGAT TCACAAAACA TCGTCGCGTG CGCAAAAACC TTTCATTTCA
GTTAATTGCC GAGCTATGTC AGAAAAGCGC CTTGAAAGCG AGCTGTTTGG TCTTGGCGAA
ACGGAGGAAG GTCAACAACC CTTTTTGCTG CAAGCGGATG GTGGCACACT GCTGCTAAAC
GATATTTTGA CCTTGCCTAA AAGCCAACAG TTGAACCTAC TGCGTTTCTT ACAAGAAGGG
ACTGTGGAGA CGCGCCAAGG GGTTCGTGCA GTCGATGTGC GTATTTTGGC CGCCAATTCG
TCAGACATCG AAAAAGCGCT GATCGATGGT GATTTTAACG AAGAGTTGTA CCACTACATT
AACGTATTGC GGATTAATGT GCCTAGTTTG AAAGAGCGCG CATCGGATAT CGTGCTACTG
GCTAAACACT TTTTGCAAGA ATACTCCAAA GAGTACAACG CTCAGGCGCG TAGCTTCTCT
GATGATGCCG TACGTGGGTT AACTCGCTAC CATTGGCCGG GTAATGTGCG TGAGCTGATG
AACCAGATCA AGCGTGTGGT ATTAATGTCA GATACTGTGG TGCTGGATGA ATCTCAGCTC
GATCTTCCCA AGCGCAGCGA TGGCCGTCGC AGCCTGAAAA GCATTCGGGA ACGCTCCGAG
CGTGATGCAC TGTTGCTGGT GTTGGAGTCG CACTCTGGGC AAGTTTCAAC GGCAGCCAAA
GAGCTGGGAG TATCGCGTGC AACCATGTAT CGCTTACTGA ATAAACACAA CTTGATCACC
GATGAAAACT TCTAA
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| Protein sequence | MSTQFRMDSV PGSLVVVGGT YEPWLAVLEK VGWRCTQVAD LRKADALFVE TGPCIGIVDL
SHDEFSLNGI ANLVSSHKQV RWLAFIREAQ LSSDTICQFI VNFCIDFFTA PIPDAQLLST
IGHQLGMLKL EKKVWPHFGS AGNMGLIGES MPMKRLRDQI KRIGPTDVSI LIYGESGTGK
ETVAKAIHKT SSRAQKPFIS VNCRAMSEKR LESELFGLGE TEEGQQPFLL QADGGTLLLN
DILTLPKSQQ LNLLRFLQEG TVETRQGVRA VDVRILAANS SDIEKALIDG DFNEELYHYI
NVLRINVPSL KERASDIVLL AKHFLQEYSK EYNAQARSFS DDAVRGLTRY HWPGNVRELM
NQIKRVVLMS DTVVLDESQL DLPKRSDGRR SLKSIRERSE RDALLLVLES HSGQVSTAAK
ELGVSRATMY RLLNKHNLIT DENF
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